Skip to Content

Network

EDISON

Package EDISON (Estimation of Directed Interactions from Sequences Of Nonhomogeneous gene expression) runs an MCMC simulation to reconstruct networks from time series data, using a non-homogeneous, time-varying dynamic Bayesian network. Networks segments and changepoints are inferred concurrently, and information sharing priors provide a reduction of the inference uncertainty.

nnet

Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.

tnet

R package for analyzing weighted, two-mode, and longitudinal networks.