# Package reference: All

Package | Description |
---|---|

A3 | A3: Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |

aaMI | Mutual information for protein sequence alignments |

abc | Tools for Approximate Bayesian Computation (ABC) |

abcdeFBA | ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package. |

ABCExtremes | ABC Extremes |

ABCoptim | |

ABCp2 | Approximate Bayesian Computational model for estimating P2 |

abctools | Tools for ABC analyses |

abd | The Analysis of Biological Data |

abf2 | Load Axon ABF2 files (currently only in gap-free recording mode) |

abind | Combine multi-dimensional arrays |

aBioMarVsuit | A Biomarker Validation Suit for predicting Survival using gene signature. |

abn | Data Modelling with Additive Bayesian Networks |

abundant | Abundant regression and high-dimensional principal fitted components |

accelerometry | Functions for processing uniaxial minute-to-minute accelerometer data |

AcceptanceSampling | Creation and evaluation of Acceptance Sampling Plans |

ACCLMA | ACC & LMA Graph Plotting |

accrued | |

accuracy | Tools for testing and improving accuracy of statistical results. |

ACD | Categorical data analisys with complete or missing responses |

Ace | |

acepack | ace() and avas() for selecting regression transformations |

acer | The ACER Method for Extreme Value Estimation |

aCGH.Spline | Robust spline interpolation for dual color array comparative genomic hybridisation data |

ACNE | Affymetrix SNP probe-summarization using non-negative matrix factorization |

acopula | Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas. |

aCRM | Convenience functions for analytical Customer Relationship Management |

acs | |

ACTCD | |

Actigraphy | Actigraphy Data Analysis |

actuar | Actuarial functions |

ActuDistns | Functions for actuarial scientists |

ada | ada: an R package for stochastic boosting |

adabag | Applies multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging |

ADaCGH | Analysis of data from aCGH experiments |

adagio | |

adapt | adapt -- multidimensional numerical integration |

AdaptFit | Adaptive Semiparametic Regression |

AdaptFitOS | Adaptive Semiparametric Regression with Simultaneous Confidence Bands |

AdaptiveSparsity | |

adaptivetau | Tau-leaping stochastic simulation |

adaptMCMC | Implementation of a generic adaptive Monte Carlo Markov Chain sampler |

adaptsmoFMRI | Adaptive Smoothing of FMRI Data |

adaptTest | Adaptive two-stage tests |

ade4 | Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences |

ade4TkGUI | ade4 Tcl/Tk Graphical User Interface |

adegenet | adegenet: an R package for the exploratory analysis of genetic and genomic data. |

adehabitat | Analysis of habitat selection by animals |

adehabitatHR | Home range Estimation |

adehabitatHS | Analysis of habitat selection by animals |

adehabitatLT | Analysis of animal movements |

adehabitatMA | Tools to Deal with Raster Maps |

adephylo | adephylo: exploratory analyses for the phylogenetic comparative method. |

AdequacyModel | Adequacy of probabilistic models and generation of pseudo-random numbers. |

ADGofTest | Anderson-Darling GoF test |

adimpro | Adaptive Smoothing of Digital Images |

adk | Anderson-Darling K-Sample Test and Combinations of Such Tests |

adlift | An adaptive lifting scheme algorithm |

ADM3 | An Interpretation of the ADM method - automated detection algorithm. |

AdMit | Adaptive Mixture of Student-t distributions |

ads | Spatial point patterns analysis |

Aelasticnet | Bayesian Adaptive Elastic-Net for high dimensional sparse quantile regression models |

AER | Applied Econometrics with R |

afc | Calculate afc |

afex | Analysis of Factorial Experiments |

AFLPsim | Hybrid simulation and genome scan for dominant markers |

afmtools | Estimation, Diagnostic and Forecasting Functions for ARFIMA models |

aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |

agce | analysis of growth curve experiments |

AGD | Analysis of Growth Data |

ageprior | Prior distributions for molecular dating |

aggrisk | Estimate individual level risk using individual case data and spatially aggregated control data |

agilp | Extracting and preprocessing Agilent express arrays |

agop | Aggregation Operators and Preordered Sets |

agRee | Various Methods for Measuring Agreement. |

agreement | Statistical Tools for Measuring Agreement |

agricolae | Statistical Procedures for Agricultural Research |

agridat | Agricultural datasets |

agrmt | Calculate agreement |

AGSDest | Estimation in adaptive group sequential trials |

agsemisc | Miscellaneous plotting and utility functions |

ahaz | Regularization for semiparametric additive hazards regression |

AICcmodavg | Model selection and multimodel inference based on (Q)AIC(c) |

AID | An R Package to Estimate Box-Cox Power Transformation Parameter |

AIGIS | Areal Interpolation for GIS data |

AIM | AIM: adaptive index model |

AIS | Tools to look at the data ("Ad Inidicia Spectata") |

akima | Interpolation of irregularly spaced data |

akmeans | Adaptive Kmeans algorithm based on threshold |

alabama | Constrained nonlinear optimization |

ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |

aLFQ | |

AlgDesign | Algorithmic Experimental Design |

ALKr | Generate Age-Length Keys for fish populations |

allan | Automated Large Linear Analysis Node |

allanvar | Allan Variance Analysis |

allelematch | Identifying unique multilocus genotypes where genotyping error and missing data may be present |

AlleleRetain | Allele Retention, Inbreeding, and Demography |

allelic | A fast, unbiased and exact allelic exact test |

AllPossibleSpellings | Computes all of a word's possible spellings. |

alm | |

alphahull | Generalization of the convex hull of a sample of points in the plane |

alphashape3d | Implementation of the 3D alpha-shape for the reconstruction of 3D sets from a point cloud |

alr3 | Data to accompany Applied Linear Regression 3rd edition |

alr4 | Data to accompany Applied Linear Regression 4rd edition |

ALS | multivariate curve resolution alternating least squares (MCR-ALS) |

ALSCPC | |

AMA | Anderson-Moore Algorithm |

amap | Another Multidimensional Analysis Package |

AMAP.Seq | Compare Gene Expressions from 2-Treatment RNA-Seq Experiments |

amba | Additive Models for Business Applications |

amei | Adaptive Management of Epidemiological Interventions |

Amelia | Amelia II: A Program for Missing Data |

amen | Additive and multiplicative effects modeling of networks and relational data |

amer | Additive mixed models with lme4 |

AmericanCallOpt | This package includes pricing function for selected American call options with underlying assets that generate payouts. |

AMGET | Post-processing tool for ADAPT 5 |

AMORE | A MORE flexible neural network package |

anacor | Simple and Canonical Correspondence Analysis. |

anaglyph | 3D Anaglyph Plots |

analogue | Analogue and weighted averaging methods for palaeoecology |

AnalyzeFMRI | Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format. |

anametrix | Bidirectional connector to Anametrix API |

anapuce | Tools for microarray data analysis |

AncestryMapper | Ancestry Mapper |

anchors | Statistical analysis of surveys with anchoring vignettes |

AnDE | An extended Bayesian Learning Technique developed by Dr. Geoff Webb |

andrews | Andrews curves |

anesrake | ANES Raking Implementation |

Animal | Analyze time-coded animal behavior data |

animalTrack | |

animation | A gallery of animations in statistics and utilities to create animations |

anm | Analog model for downscaling |

ANN | Feedforward Artificial Neural Network optimized by Genetic Algorithm |

AnnotLists | AnnotLists: A tool to annotate multiple lists from a specific annotation file. |

anoint | Analysis of interactions |

ant | Version of ant specific to R |

AnthropMMD | A GUI for Mean Measures of Divergence |

antitrust | Antitrust Library |

aod | Analysis of Overdispersed Data |

aods3 | Analysis of Overdispersed Data using S3 methods |

AOfamilies | Aranda-Ordaz (AO) transformation families |

aoristic | |

apcluster | Affinity Propagation Clustering |

ape | Analyses of Phylogenetics and Evolution |

aplpack | Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and some slider functions |

appell | Compute Appell's F1 hypergeometric function |

apple | Approximate Path for Penalized Likelihood Estimators |

AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |

approximator | Bayesian prediction of complex computer codes |

APSIMBatch | Analysis the output of Apsim software |

apsrtable | apsrtable model-output formatter for social science |

apt | Asymmetric Price Transmission (apt) |

apTreeshape | Analyses of Phylogenetic Treeshape |

aqfig | Functions to help display air quality model output and monitoring data |

aqp | Algorithms for Quantitative Pedology |

aqr | Interface methods to use with an ActiveQuant Master Server |

AquaEnv | AquaEnv - an integrated development toolbox for aquatic chemical model generation |

ARAMIS | A R Adaptive Multiple Importance Sampling |

aratio | Assessment ratio analysis |

archetypes | Archetypal Analysis |

ArDec | Time series autoregressive-based decomposition |

ARES | Environment air pollution epidemiology: a library for time series analysis |

arf3DS4 | Activated Region Fitting, fMRI data analysis (3D). |

arfima | Fractional ARIMA Time Series Modeling |

argosfilter | Argos locations filter |

argparse | Command line optional and positional argument parser. |

arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |

aroma.affymetrix | Analysis of large Affymetrix microarray data sets |

aroma.apd | A probe-level data file format used by aroma.affymetrix [DEPRECATED] |

aroma.cn | Copy-number analysis of large microarray data sets |

aroma.core | Core methods and classes used by aroma.* packages part of The Aroma Framework |

aroma.light | Light-weight methods for normalization and visualization of microarray data using only basic R data types |

ArrayBin | Binarization of numeric data arrays |

arrayhelpers | Convenience functions for arrays |

arrayImpute | Missing imputation for microarray data |

arrayMissPattern | Exploratory analysis of Missing patterns for microarray data |

ars | Adaptive Rejection Sampling |

ARTIVA | Infer a time-varying DBN network from time series data. |

ARTP | Gene and Pathway p-values computed using the Adaptive Rank Truncated Product |

arules | Mining Association Rules and Frequent Itemsets |

arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |

arulesSequences | Mining frequent sequences |

arulesViz | Visualizing Association Rules and Frequent Itemsets |

asbio | A collection of statistical tools for biologists |

ascii | Export R objects to several markup languages |

ascrda | Augmented SCRDA |

asd | Simulations for adaptive seamless designs |

ash | David Scott's ASH routines |

aspace | A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns |

aspect | Aspects of Multivariables |

assertive | Readable check functions to ensure code integrity. |

AssetPricing | Optimal pricing of assets with fixed expiry date. |

assist | A Suite of S-Plus Functions Implementing Smoothing Splines |

AssotesteR | Statistical Tests for Genetic Association Studies |

aster | Aster Models |

aster2 | Aster Models |

astro | Astronomy Functions, Tools and Routines |

astroFns | Astronomy: time and position functions, misc. utilities |

astsa | Applied Statistical Time Series Analysis |

asuR | Advanced statistics using R |

asympTest | Asymptotic statistic |

asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |

AtelieR | A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests. |

atm | Additive Term Models |

atmi | Analysis of technical market indicators |

AtmRay | Acoustic Traveltime Calculations for 1-D Atmospheric Models |

attfad | Evaluation and comparison of expression data and GRNs |

AUC | Threshold independent performance measures for probabilistic classifiers. |

AUCRF | Variable Selection with Random Forest and the Area Under the Curve |

audio | Audio Interface for R |

audiolyzR | audiolyzR: Give your data a listen |

audit | Bounds for Accounting Populations |

auteur | Bayesian sampler of the trait-evolutionary process |

automap | Automatic interpolation package |

autopls | pls regression with backward selection of predictors |

AutoSEARCH | General-to-Specific (GETS) Model Selection |

aws | Adaptive Weights Smoothing |

AWS.tools | R package to use Amazon Web Services |

awsMethods | Class and Methods definitions for packages aws, adimpro, fmri, dwi |

aylmer | A generalization of Fisher's exact test |

B2Z | Bayesian Two-Zone Model |

b6e6rl | Adaptive differential evolution, b6e6rl variant |

BaBooN | Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data |

BACCO | Bayesian Analysis of Computer Code Output (BACCO) |

backfitRichards | Backfitted independent values of Richards curves |

backtest | Exploring portfolio-based conjectures about financial instruments |

BACprior | Sensitivity of the Bayesian Adjustment for Confounding (BAC) algorithm to the choice of hyperparameter omega. |

BADER | Bayesian Analysis of Differential Expression in RNA Sequencing Data |

BAEssd | Bayesian Average Error approach to Sample Size Determination |

bagRboostR | Ensemble bagging and boosting classifiers |

BaM | Functions and datasets for books by Jeff Gill. |

BAMD | Bayesian Association Model for Genomic Data with Missing Covariates |

bamdit | Bayesian Meta-Analysis of diagnostic test data |

bams | |

bandit | |

barcode | Barcode distribution plots |

BARD | Better Automated ReDistricting |

bark | Bayesian Additive Regresssion Kernels |

Barnard | Barnard's Unconditional Test |

BAS | Bayesian Model Averaging using Bayesian Adaptive Sampling |

BaSAR | Bayesian Spectrum Analysis in R |

base64 | Base 64 encoder/decoder |

base64enc | Tools for base64 encoding |

baseline | Baseline Correction of Spectra |

basicspace | A Package to Recover a Basic Space from Issue Scales |

BASIX | |

BaSTA | A package for estimating age-specific survival from incomplete capture-recapture/recovery data |

batade | HTML reports and so on |

batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |

BatchExperiments | Statistical experiments on batch computing clusters. |

BatchJobs | Batch computing with R. |

batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |

BayesBridge | Bridge Regression |

bayesCGH | Bayesian analysis of array CGH data |

bayesclust | Tests/Searches for significant clusters in genetic data. |

BayesComm | Bayesian community ecology analysis |

bayescount | Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC |

BayesCR | Bayesian analysis of censored linear regression models with scale mixtures of normal (SMN) distributions. |

BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |

bayesDem | Graphical User Interface for bayesTFR, bayesLife and bayesPop |

BayesFactor | Computation of Bayes factors for common designs |

bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |

bayesGDS | Functions to implement Generalized Direct Sampling |

BayesLCA | |

bayesLife | Bayesian Projection of Life Expectancy |

BayesLogit | Logistic Regression |

bayesm | Bayesian Inference for Marketing/Micro-econometrics |

bayesMCClust | |

bayesmix | Bayesian Mixture Models with JAGS |

BayesNI | BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints |

bayespack | Numerical Integration for Bayesian Inference |

BayesPanel | Bayesian Methods for Panel Data Modeling and Inference |

bayesPop | Probabilistic Population Projection |

bayespref | Hierarchical Bayesian analysis of ecological count data |

bayesQR | Bayesian quantile regression |

BayesQTLBIC | Bayesian multi-locus QTL analysis based on the BIC criterion |

bayess | Bayesian Essentials with R |

BayesSAE | |

BayesSingleSub | Computation of Bayes factors for interrupted time-series designs |

bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |

bayesTFR | Bayesian Fertility Projection |

Bayesthresh | Bayesian thresholds mixed-effects models for categorical data |

BayesTree | Bayesian Methods for Tree Based Models |

BayesValidate | BayesValidate Package |

BayesVarSel | Bayesian Variable selection in Linear Models |

BayesX | R Utilities Accompanying the Software Package BayesX |

BayesXsrc | R Package Distribution of the BayesX C++ Sources |

BayHap | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |

BayHaz | R Functions for Bayesian Hazard Rate Estimation |

BaylorEdPsych | R Package for Baylor University Educational Psychology Quantitative Courses |

BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer |

BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |

BB | Solving and Optimizing Large-Scale Nonlinear Systems |

bbefkr | |

bbemkr | Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error |

BBmisc | Miscellaneous helper functions for B. Bischl. |

bbmle | Tools for general maximum likelihood estimation |

BBMM | Brownian bridge movement model |

bbo | Biogeography-Based Optimization |

bc3net | BC3NET |

BCA | Business and Customer Analytics |

BCBCSF | Bias-corrected Bayesian Classification with Selected Features |

BCDating | Business Cycle Dating and Plotting Tools - BCDating |

BcDiag | Diagnostics plots for Bicluster Data |

BCE | Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |

BCEA | Bayesian Cost Effectiveness Analysis |

BCEs0 | Bayesian models for cost-effectiveness analysis in the presence of structural zero costs |

Bchron | Bayesian radiocarbon chronologies and relative sea level analysis |

Bclim | Bayesian Palaeoclimate Reconstruction from Pollen |

bclust | Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data. |

bcool | Bringing to light significant Columns correlated with Organism Labels |

bcp | A Package for Performing a Bayesian Analysis of Change Point Problems |

bcrm | |

bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |

bda | Density Estimation for Binned/Weighted Data |

BDgraph | Graph determination based on birth-death MCMC |

bdoc | Bayesian Discrete Ordered Classification of DNA Barcodes |

bdpv | Inference and design for predictive values in binary diagnostic tests |

bdsmatrix | Routines for Block Diagonal Symmetric matrices |

bdynsys | Bayesian Dynamical System Model |

beadarrayFilter | Bead filtering for Illumina bead arrays |

beadarrayMSV | Analysis of Illumina BeadArray SNP data including MSV markers |

beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |

bear | Average bioequivalence and bioavailability data analysis tool |

BEDASSLE | Disentangles the effects of geographic and ecological isolation on genetic differentiation |

beeswarm | The bee swarm plot, an alternative to stripchart |

belief | Contains basic functions to manipulate belief functions and associated mass assignments |

benchden | 28 benchmark densities from Berlinet/Devroye (1994) |

benchmark | Benchmark Experiments Toolbox |

Benchmarking | Benchmark and frontier analysis using DEA and SFA |

BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |

bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |

ber | Batch Effects Removal |

Bergm | Bayesian analysis for exponential random graph models |

BerkeleyEarth | |

Bessel | Bessel -- Bessel Functions Computations and Approximations |

BEST | Bayesian Estimation Supersedes the t-Test |

bestglm | Best Subset GLM |

betafam | Detecting rare variants for quantitative traits using nuclear families |

betapart | Partitioning beta diversity into turnover and nestedness components |

betaper | Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data |

betareg | Beta Regression |

betategarch | Simulation, estimation and forecasting of Beta-Skew-t-EGARCH models |

betfairly | Access Betfair API from R |

bethel | Bethel's algorithm. |

bfa | Bayesian Factor Analysis |

bfast | Breaks For Additive Season and Trend (BFAST) |

bfp | Bayesian Fractional Polynomials |

bgeva | Binary Generalized Extreme Value Additive Models |

BGLR | |

bgmm | Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling. |

BGPhazard | |

BGSIMD | Block Gibbs Sampler with Incomplete Multinomial Distribution |

BH | The Boost C++ Libraries |

Bhat | General likelihood exploration |

BHH2 | Useful Functions for Box, Hunter and Hunter II |

biasbetareg | Bias correction of the parameter estimates of the beta regression model |

BiasedUrn | Biased Urn model distributions |

bibtex | bibtex parser |

biclust | BiCluster Algorithms |

bicreduc | Reduction algorithm for the NPMLE for the distribution function of bivariate interval-censored data |

BiDimRegression | Calculates the bidimensional regression between two 2D configurations |

bifactorial | Inferences for bi- and trifactorial trial designs |

biganalytics | A library of utilities for big.matrix objects of package bigmemory. |

bigdata | Big Data Analytics |

bigGP | Distributed Gaussian process calculations |

BiGGR | Creates an interface to BiGG database, provides a framework for simulation and produces flux graphs |

biglars | Scalable Least-Angle Regression and Lasso |

biglm | bounded memory linear and generalized linear models |

bigmatrix | Tuning Insensitive Graph Estimation and Regression |

bigmemory | Manage massive matrices with shared memory and memory-mapped files |

bigmemory.sri | A shared resource interface for Bigmemory Project packages |

bigml | R bindings for the BigML API |

biGraph | Analysis Toolbox For Bipartite Graphs |

bigrf | Big Random Forests: Classification and Regression Forests for Large Data Sets |

bigRR | Generalized Ridge Regression (with special advantage for p >> n cases) |

bigtabulate | table-, tapply-, and split-like functionality for matrix and big.matrix objects. |

BigTSP | Top Scoring Pair based methods for classification |

bild | bild: a package for BInary Longitudinal Data |

bim | Bayesian Interval Mapping Diagnostics |

bimetallic | Power for SNP analyses using silver standard cases |

binarySimCLF | Simulates Correlated Binary Data |

BINCO | Bootstrap Inference for Network COstruction |

bindata | Generation of Artificial Binary Data |

binGroup | Evaluation and experimental design for binomial group testing |

binhf | Haar-Fisz functions for binomial data |

binMto | Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions |

BinNor | Simultaneous generation of multivariate binary and normal variates. |

binom | Binomial Confidence Intervals For Several Parameterizations |

binomialcftp | Generates binomial random numbers via the coupling from the past algorithm |

binomlogit | Efficient MCMC for Binomial Logit Models |

binomSamSize | Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling |

binomTools | Performing diagnostics on binomial regression models |

binseqtest | Exact Binary Sequential Designs and Analysis |

bio.infer | Predict environmental conditions from biological observations |

Biodem | Biodemography functions |

BiodiversityR | GUI for biodiversity, suitability and community ecology analysis |

BioGeoBEARS | BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts |

Biograph | Explore life histories |

BioIDMapper | Mapping between BioIDs |

biom | An interface package (beta) for the BIOM file format. |

BioMark | Find biomarkers in two-class discrimination problems |

BiomarkeR | Paired (pBI) and Unpaired Biomarker Identifier (uBI) including a method to infer networks. |

biomod2 | Ensemble platform for species distribution modeling |

bionetdata | |

biopara | Self-contained parallel system for R |

BioPhysConnectoR | BioPhysConnectoR |

biOps | Image processing and analysis |

biOpsGUI | GUI for Basic image operations |

bios2mds | From BIOlogical Sequences to MultiDimensional Scaling |

BioStatR | Initiation |

bipartite | Visualising bipartite networks and calculating some (ecological) indices. |

BiplotGUI | Interactive Biplots in R |

birch | Dealing with very large datasets using BIRCH |

bise | Auxiliary functions for phenological data analysis |

bisectr | Tools to find bad commits with git bisect |

biseVec | Auxiliary functions for phenological data analysis |

bisoreg | Bayesian Isotonic Regression with Bernstein Polynomials |

bit | A class for vectors of 1-bit booleans |

bit64 | |

bitops | Bitwise Operations |

bivarRIpower | Sample size calculations for bivariate longitudinal data |

bivpois | Bivariate Poisson Models Using The EM Algorithm |

biwavelet | Conduct univariate and bivariate wavelet analyses |

biwt | Functions to compute the biweight mean vector and covariance & correlation matrices |

bizdays | |

BlakerCI | Blaker's binomial confidence limits |

BLCOP | Black-Litterman and copula-opinion pooling frameworks |

blender | Analyze biotic homogenization of landscapes |

blighty | United Kingdom coastlines |

blkergm | |

blm | Binomial linear and linear-expit regression |

blme | Bayesian Linear Mixed-Effects Models |

blockcluster | Co-Clustering package for binary, contingency, continuous and categorical data-sets. |

BlockMessage | Creates strings that show a text message in 8 by 8 block letters |

blockmodeling | An R package for Generalized and classical blockmodeling of valued networks |

blockrand | Randomization for block random clinical trials |

blockTools | Block, assign, and diagnose potential interference in randomized experiments |

BLR | Bayesian Linear Regression |

BMA | Bayesian Model Averaging |

BMAmevt | |

bmd | Benchmark dose analysis for dose-response data |

bmem | Mediation analysis with missing data using bootstrap |

Bmix | Bayesian Sampling for Stick-breaking Mixtures |

bmk | MCMC diagnostics package |

BMN | The pseudo-likelihood method for pairwise binary markov networks |

bmp | Read Windows Bitmap (BMP) images |

bmrm | Bundle Methods for Regularized Risk Minimization Package |

BMS | Bayesian Model Averaging Library |

bnlearn | Bayesian network structure learning, parameter learning and inference |

BNPdensity | Ferguson-Klass type algorithm for posterior normalized random measures |

bnpmr | Bayesian monotonic nonparametric regression |

boa | Bayesian Output Analysis Program (BOA) for MCMC |

BOG | Bacterium and virus analysis of Orthologous Groups (BOG) is a package for identifying differentially regulated genes in the light of gene functions. |

boilerpipeR | Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/) |

Bolstad | Bolstad functions |

Bolstad2 | Bolstad functions |

boolean | Boolean Binary Response Models |

boolfun | Cryptographic Boolean Functions |

BoolNet | Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks |

boost | Boosting Methods for Real and Simulated Data |

boostSeq | Optimized GWAS cohort subset selection for resequencing studies |

boot | Bootstrap Functions (originally by Angelo Canty for S) |

BootCL | Bootstrapping test for chromosomal localization |

bootES | Bootstrap Effect Sizes |

bootfs | Use multiple feature selection algorithms to derive robust feature sets for two or multiclass classification problems. |

BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |

bootRes | Bootstrapped Response and Correlation Functions |

bootruin | A bootstrap test for the probability of ruin in the classical risk process |

bootspecdens | Testing equality of spectral densities |

bootStepAIC | Bootstrap stepAIC |

bootstrap | Functions for the Book "An Introduction to the Bootstrap" |

Boruta | A wrapper algorithm for all-relevant feature selection |

boss | Boosted One-Step Statistics: Fast and accurate approximations for GLM, GEE and Mixed models for use in GWAS |

BoSSA | a Bunch of Structure and Sequence Analysis |

boussinesq | Analytic Solutions for (ground-water) Boussinesq Equation |

bpca | Biplot of Multivariate Data Based on Principal Components Analysis |

bpcp | Beta Product Confidence Procedure for Right Censored Data |

bPeaks | bPeaks: a simple and intuitive approach for detection of basic peaks (bPeaks) from ChIP-seq data |

BPHO | Bayesian Prediction with High-order Interactions |

bpkde | Back-Projected Kernel Density Estimation |

bqtl | Bayesian QTL mapping toolkit |

BradleyTerry | Bradley-Terry Models -- this package is now deprecated in favour of 'BradleyTerry2' |

BradleyTerry2 | Bradley-Terry Models |

BrailleR | Improved access for blind useRs |

brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory. |

branchLars | Cost-efficient Variable Selection |

breakage | SICM pipette tip geometry estimation |

bReeze | Functions for wind resource assessment |

brew | Templating Framework for Report Generation |

brglm | Bias reduction in binomial-response generalized linear models. |

bride | Brier score decomposition of probabilistic forecasts for binary events |

brlr | Bias-reduced logistic regression |

brnn | brnn (Bayesian regularization for feed-forward neural networks) |

Brobdingnag | Very large numbers in R |

broman | Karl Broman's R code |

Brq | Bayesian analysis of quantile regression models. |

BRugs | R interface to the OpenBUGS MCMC software |

bs | Package for the Birnbaum-Saunders distribution |

BSagri | Statistical methods for safety assessment in agricultural field trials |

bscr | Bayesian parametric and semi-parametric analyses for semi-competing risks data |

BSDA | Basic Statistics and Data Analysis |

BsMD | Bayes Screening and Model Discrimination |

bsml | Basis Selection from Multiple Libraries |

bspec | Bayesian spectral inference |

bspmma | bspmma: Bayesian Semiparametric Models for Meta-Analysis |

BSquare | Bayesian Simultaneous Quantile Regression |

bst | Gradient Boosting |

bstats | Ordinary Regression Analysis with R |

BTSPAS | Bayesian Time-Strat. Population Analysis |

BTYD | Implementing Buy 'Til You Die Models |

bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |

BurStFin | |

BurStMisc | Burns Statistics miscellaneous |

bursts | Markov model for bursty behavior in streams |

butler | Unit testing, profiling and benchmarking for R |

bvenn | A Simple alternative to proportional Venn diagrams |

bvls | The Stark-Parker algorithm for bounded-variable least squares |

bvpSolve | Solvers for boundary value problems of ordinary differential equations |

BVS | Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies |

bwsurvival | Nonparametric conditional survival function for successive survival times |

c060 | Additional variable selection, model validation and parameter tuning functions for glmnet models |

c3net | Infering large-scale gene networks with C3NET |

C50 | C5.0 Decision Trees and Rule-Based Models |

ca | Simple, Multiple and Joint Correspondence Analysis |

cabootcrs | Bootstrap Confidence Regions for Correspondence Analysis. |

cacher | Tools for caching and distributing statistical analyses |

cacheSweave | Tools for caching Sweave computations |

cacIRT | Classification accuracy and consistency under Item Response Theory |

CaDENCE | Conditional Density Estimation Network Construction and Evaluation |

CADFtest | This package performs the CADF unit root test proposed in Hansen (1995). |

CADStat | Provides a GUI to several statistical methods useful for causal assessment. |

caGUI | A Tcl/Tk GUI for the functions in the ca package |

Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output. |

cairoDevice | Cairo-based cross-platform antialiased graphics device driver. |

CalciOMatic | Automatic Calcium Imaging Analysis |

calib | Statistical tool for calibration of plate based bioassays |

calibFit | Statistical models and tools for assay calibration |

calibrate | Calibration of Scatterplot and Biplot Axes |

calibrator | Bayesian calibration of complex computer codes |

CALINE3 | |

calmate | CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation |

CAMAN | Finite Mixture Models and meta-analysis tools - based on C.A.MAN |

caMassClass | Processing & Classification of Protein Mass Spectra (SELDI) Data |

camel | |

cancerTiming | Estimation of temporal ordering of cancer abnormalities |

candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |

canvas | R graphics device targeting the HTML canvas element. |

cape | Combined analysis of pleiotropy and epistasis |

caper | Comparative Analyses of Phylogenetics and Evolution in R |

capme | Covariate Adjusted Precision Matrix Estimation |

capushe | Capushe, data-driven slope estimation and dimension jump |

capwire | Estimates population size from non-invasive sampling |

car | Companion to Applied Regression |

CARBayes | Spatial areal unit modelling |

CarbonEL | Carbon Event Loop |

carcass | Estimation of the number of fatalities from carcass searches |

cardidates | Identification of cardinal dates in ecological time series |

care | High-Dimensional Regression and CAR Score Variable Selection |

CARE1 | |

caret | Classification and Regression Training |

caretLSF | Classification and Regression Training LSF Style |

caretNWS | Classification and Regression Training in Parallel Using NetworkSpaces |

caribou | Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry |

caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |

CARramps | Reparameterized and marginalized posterior sampling for conditional autoregressive models |

CARrampsOcl | |

CAscaling | |

caschrono | S |

caspar | Clustered and sparse regression (CaSpaR) |

cat | Analysis of categorical-variable datasets with missing values |

catdata | |

CatDyn | Fishery Stock Assessment by Catch Dynamic Models |

catenary | Fits a catenary to given points |

catIrt | An R Package for Simulating IRT-Based Computerized Adaptive Tests |

catmap | Case-control And Tdt Meta-Analysis Package |

catnet | Categorical Bayesian Network Inference |

caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc. |

catR | Procedures to generate IRT adaptive tests (CAT) |

catspec | Special models for categorical variables |

CausalGAM | Estimation of Causal Effects with Generalized Additive Models |

causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |

Causata | Analysis utilities for binary classification and Causata users. |

CAVIAR | Collection of Functions for Processing, Visualizing and Analyzing Cambial Activity and Wood Formation Monitoring Data |

cba | Clustering for Business Analytics |

CBPS | R Package for Covariate Balancing Propensity Score |

CCA | Canonical correlation analysis |

CCAGFA | Bayesian canonical correlation analysis and group factor analysis |

ccaPP | (Robust) canonical correlation analysis via projection pursuit |

cccd | Class Cover Catch Digraphs |

ccChooser | Developing a core collections |

cccrm | CCC-RM |

ccems | Combinatorially Complex Equilibrium Model Selection |

ccgarch | Conditional Correlation GARCH models |

cclust | Convex Clustering Methods and Clustering Indexes |

CCM | Correlation classification method (CCM) |

CCMtools | Clustering through "Correlation Clustering Model" (CCM) and cluster analysis tools. |

CCP | Significance Tests for Canonical Correlation Analysis (CCA) |

CCTpack | |

cda | Coupled dipole approximation in electromagnetic scattering |

cdb | Reading and Writing Constant DataBases |

CDFt | Statistical downscaling through CDF-transform |

CDLasso | Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |

CDM | Cognitive Diagnosis Modeling |

CDNmoney | Components of Canadian Monetary and Credit Aggregates |

CDVine | Statistical inference of C- and D-vine copulas |

cec2005benchmark | Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization |

cec2013 | Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 |

celestial | Collection of common astronomical conversion routines. |

CellularAutomaton | One-Dimensional Cellular Automata |

cellVolumeDist | Functions to fit cell volume distributions and thereby estimate cell growth rates and division times |

celsius | Retrieve Affymetrix microarray measurements and metadata from Celsius |

cem | Coarsened Exact Matching |

cems | Conditional expectation manifolds. |

censNID | |

censReg | Censored Regression (Tobit) Models |

CensRegMod | Fitting Normal and Student-t censored regression model. |

CePa | Centrality-based pathway enrichment |

cepp | |

cfa | Analysis of configuration frequencies (CFA) |

CfEstimateQuantiles | Estimate quantiles using any order Cornish-Fisher expansion |

CFL | Compensatory Fuzzy Logic |

cg | Comparison of groups |

cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it. |

cgdsr | R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS). |

CGene | Causal Genetic Analysis |

cggd | Continuous Generalized Gradient Descent |

cgh | Microarray CGH analysis using the Smith-Waterman algorithm |

cghFLasso | Detecting hot spot on CGH array data with fused lasso regression. |

cghseg | Segmentation methods for array CGH analysis |

CGIwithR | CGI Programming in R |

CGP | Composite Gaussian process models |

cgwtools | My collection of useful tools |

ChainLadder | Statistical methods for the calculation of outstanding claims reserves in general insurance |

ChangeAnomalyDetection | Change Anomaly Detection |

changeLOS | Change in LOS |

changepoint | An R package for changepoint analysis |

charlson | Converts listwise icd9 data into comorbidity count and Charlson Index |

CHCN | Canadian Historical Climate Network |

cheatmap | |

cheb | Discrete Linear Chebyshev Approximation |

chebpol | Multivariate Chebyshev interpolation |

CheckDigit | Calculate and verify check digits |

cheddar | Analysis and visualisation of ecological communities |

chemCal | Calibration functions for analytical chemistry |

chemometrics | Multivariate Statistical Analysis in Chemometrics |

ChemometricsWithR | Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences |

ChemometricsWithRData | Data for package ChemometricsWithR |

chemosensors | |

ChemoSpec | Exploratory Chemometrics for Spectroscopy |

cherry | Multiple testing methods for exploratory research |

chillR | Statistical methods for phenology analysis in temperate fruit trees |

chngpt | |

CHNOSZ | Chemical Thermodynamics and Activity Diagrams |

ChoiceModelR | Choice Modeling in R |

choplump | Choplump tests |

chords | Estimation in respondent driven samples. |

chplot | Augmented Convex Hull Plots |

chron | Chronological objects which can handle dates and times |

CHsharp | Choi and Hall Clustering in 3d |

CIFsmry | |

cimis | R package for retrieving data from CIMIS. |

cin | Causal Inference for Neuroscience |

CINID | |

cir | Nonparametric estimation of monotone functions via isotonic regression and centered isotonic regression |

circlize | Circular layout in R |

CircNNTSR | CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models |

CircSpatial | Functions For Circular Spatial Data |

CircStats | Circular Statistics, from "Topics in circular Statistics" (2001) |

circular | Circular Statistics |

cit | Causal Inference Test |

CITAN | CITation ANalysis toolpack |

citbcmst | Assigning tumor samples to CIT Breast Cancer Molecular Subtypes from gene expression data |

citccmst | CIT Colon Cancer Molecular SubTypes Prediction |

CityPlot | Visualization of structure and contents of a database |

Ckmeans.1d.dp | Optimal distance-based clustering for one-dimensional data |

clac | Clust Along Chromosomes, a method to call gains/losses in CGH array data |

cladoRcpp | C++ implementations of phylogenetic calculations |

CLAG | An unsupervised non hierarchical clustering algorithm handling biological data |

class | Functions for Classification |

classGraph | Construct Graphs of S4 Class Hierarchies |

classifly | Explore classification models in high dimensions |

classify | Classification Accuracy and Consistency under IRT models. |

classInt | Choose univariate class intervals |

classPP | Projection Pursuit for supervised classification |

cldr | Language Identifier based on CLD library |

clhs | |

clim.pact | Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data. |

climatol | Some Tools for Climatology: series homogenization, plus windrose and Walter&Lieth diagrams |

climdex.pcic | PCIC implementation of Climdex routines |

clime | Constrained L1-minimization for Inverse (covariance) Matrix Estimation |

clines | Calculates Contour Lines |

clinfun | Clinical Trial Design and Data Analysis Functions |

ClinicalRobustPriors | Robust Bayesian Priors in Clinical Trials: An R Package for Practitioners |

clinsig | Clinical significance functions. |

clinUtiDNA | Clinical Utility of DNA Testing |

clogitL1 | Fitting exact conditional logistic regression with lasso and elastic net penalties. |

cloudRmpi | Cloud-based MPI Parallel Processing for R (cloudRmpi) |

cloudRmpiJars | Third-party jars for cloudRmpi |

cloudUtil | Cloud Util Plots |

clpAPI | R Interface to C API of COIN-OR Clp |

CLSOCP | A smoothing Newton method SOCP solver |

clue | Cluster ensembles |

clues | Clustering Method Based on Local Shrinking |

cluster | Cluster Analysis Extended Rousseeuw et al. |

clusterCons | Calculate the consensus clustering result from re-sampled clustering experiments with the option of using multiple algorithms and parameter |

clusterCrit | Clustering Indices |

clusterfly | Explore clustering interactively using R and GGobi |

clustergas | A hierarchical clustering method based on genetic algorithms |

clusterGeneration | random cluster generation (with specified degree of separation) |

clusterGenomics | Identifying clusters in genomics data by recursive partitioning |

clusterPower | Power calculations for cluster-randomized and cluster-randomized crossover trials |

clusterRepro | Reproducibility of gene expression clusters |

clusterSim | Searching for optimal clustering procedure for a data set |

clusteval | Evaluation of Clustering Algorithms |

clusthaplo | Clustering of haplotypes |

ClustOfVar | Clustering of variables |

clustrd | |

clustsig | Significant Cluster Analysis |

clustTool | GUI for clustering data with spatial information |

clustvarsel | Variable Selection for Model-Based Clustering |

clv | Cluster Validation Techniques |

clValid | Validation of Clustering Results |

cmaes | Covariance Matrix Adapting Evolutionary Strategy |

CMC | Cronbach-Mesbah Curve |

cmm | Categorical Marginal Models |

cMonkey | cMonkey integrated biclustering algorithm |

cmprsk | Subdistribution Analysis of Competing Risks |

cmprskContin | Continuous mark-specific relative risks for two groups |

cmrutils | Misc Functions of the Center for the Mathematical Research |

cncaGUI | Canonical Non-symmetrical Correspondence Analysis in R |

CNprep | pre-process DNA copy number (CN) data for detection of CN events |

CNVassoc | Association analysis of CNV data |

CNVassocData | |

coalescentMCMC | MCMC Algorithms for the Coalescent |

coarseDataTools | A collection of functions to help with analysis of coarsely observed data |

COBRA | Nonlinear Aggregation of Predictors |

cobs | COBS -- Constrained B-splines (Sparse matrix based) |

cobs99 | Constrained B-splines -- outdated 1999 version |

CoClust | Copula based cluster analysis |

CoCo | Graphical modelling by log-linear models (an interface from R to CoCo) |

CoCoCg | Graphical modelling by CG regressions |

CoCoGraph | Interactive and dynamic graphs for the CoCo objects |

cocor | Comparing correlations |

cocorresp | Co-correspondence analysis methods |

cocron | Statistical comparisons of two or more alpha coefficients |

coda | Output analysis and diagnostics for MCMC |

codep | Multiscale Codependence Analysis |

codetools | Code Analysis Tools for R |

coefficientalpha | Robust Cronbach's alpha with missing and non-normal data |

coefplot | Plots Coefficients from Fitted Models |

coenoflex | Gradient-Based Coenospace Vegetation Simulator |

coexist | Species coexistence modeling and analysis |

coin | Conditional Inference Procedures in a Permutation Test Framework |

CoinMinD | Simultaneous Confidence Interval for Multinomial Proportion |

colbycol | Read big text files column by column, sometimes much bigger than available RAM, into R. |

colcor | Tests for column correlation in the presence of row correlation |

cold | cold: a package for Count Longitudinal Data |

CollocInfer | Collocation Inference for Dynamic Systems |

coloc | Colocalisation tests of two genetic traits |

colorfulVennPlot | Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data. |

colorout | Colorize R output on terminal emulators |

colorRamps | Builds color tables |

colorspace | Color Space Manipulation |

colortools | Tools for colors in an HSV color model |

combinat | combinatorics utilities |

CombMSC | Combined Model Selection Criteria |

comclim | |

commandr | Command pattern in R |

CommonJavaJars | Useful libraries for building a Java based GUI under R |

CommonTrend | Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics. |

comorbidities | Categorizes ICD-9-CM codes based on published comorbidity indices |

Comp2ROC | Compare two ROC curves that intersect |

compactr | Creates empty plots with compact axis notation |

ComPairWise | Compare phylogenetic or population genetic data alignments |

compare | Comparing Objects for Differences |

compareGroups | Descriptive analysis by groups |

compareODM | comparison of medical forms in CDISC ODM format |

CompareTests | Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens |

comparison | Multivariate likelihood ratio calculation and evaluation |

compeir | Reporting event-specific incidence rates for competing risks data |

CompetingRiskFrailty | Competing Risk Model with Frailties for Right Censored Survival Data |

compHclust | Complementary Hierarchical Clustering |

complex.surv.dat.sim | Simulation of complex survival data |

CompLognormal | Functions for actuarial scientists |

CompModSA | Sensitivity Analysis for Complex Computer Models |

compoisson | Conway-Maxwell-Poisson Distribution |

COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |

compositions | Compositional Data Analysis |

compositionsGUI | Graphical User Environment for Compositional Data Analysis |

compound.Cox | Regression estimation based on the compound shrinkage method under the Cox proportional hazard model |

Compounding | Computing Continuous Distributions |

compOverlapCorr | Comparing overlapping correlation coefficients |

CompQuadForm | Distribution function of quadratic forms in normal variables |

CompRandFld | Composite-likelihood based Analysis of Random Fields |

compute.es | Compute Effect Sizes |

ConConPiWiFun | This package contains an implementation of continuous convex piecewise (linear and quadratic) functions |

concor | Concordance |

concord | Concordance and reliability |

concreg | Concordance regression |

cond | Approximate conditional inference for logistic and loglinear models |

condGEE | Parameter estimation in conditional GEE for recurrent event gap times |

condmixt | Conditional Density Estimation with Neural Network Conditional Mixtures |

CondReg | Condition Number Regularized Covariance Estimation |

coneproj | Primal or Dual Cone Projections with Routines for Shape-restricted Regression |

conf.design | Construction of factorial designs |

confReg | Confidence Estimators for Individual Regression Predictions |

conics | Plot Conics |

conjoint | Conjoint analysis package |

ConjointChecks | A package to check the cancellation axioms of conjoint measurement. |

connectedness | Find disconnected subsets for a two-way classification |

CONOR | CONOR |

CONORData | CONORData |

constrainedKriging | Constrained, covariance-matching constrained and universal point or block kriging |

Containers | Object-Oriented Data Structures for R |

contfrac | Continued fractions |

conting | Bayesian analysis of contingency tables |

contrast | A collection of contrast methods |

ConvCalendar | Converts dates between calendars |

ConvergenceConcepts | Seeing convergence concepts in action |

convevol | |

convexHaz | Nonparametric MLE/LSE of convex hazard |

COP | Variables selection for index models via correlation pursuit |

copas | Statistical methods to model and adjust for bias in meta-analysis |

copBasic | Basic Theoretical Copula, Empirical Copula, and Various Utility Functions |

copula | Multivariate Dependence with Copulas |

copulaedas | Estimation of Distribution Algorithms Based on Copulas |

CopulaRegression | Bivariate Copula Based Regression Models |

CopyDetect | An R Package for Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests |

corcounts | Generate correlated count random variables |

CORE | Cores of Recurrent Events |

CORElearn | CORElearn - classification, regression, feature evaluation and ordinal evaluation |

corHMM | Analysis of binary character evolution |

corpcor | Efficient Estimation of Covariance and (Partial) Correlation |

corpora | Statistics and data sets for corpus frequency data |

CorrBin | Nonparametrics with clustered binary data |

Correlplot | |

CORREP | Multivariate Correlation Estimator and Statistical Inference Procedures. |

corrgram | Plot a correlogram |

corrperm | Permutation Tests of Correlation with Repeated Measurements |

corrplot | Visualization of a correlation matrix |

corrsieve | CorrSieve |

corTools | |

COSINE | COndition SpecIfic sub-NEtwork |

cosmoFns | Functions for cosmological distances, times, luminosities, etc. |

cosso | Fit Regularized Nonparametric Regression Models Using COSSO Penalty. |

costat | Time series costationarity determination |

cotrend | Consistant Cotrend Rank Selection |

COUNT | Functions, data and code for count data. |

countrycode | Convert country names and country codes |

CountsEPPM | Mean and variance modeling of count data |

covLCA | Latent Class Models with Covariate Effects on Underlying and Measured Variables |

Covpath | COVPATH Package |

covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |

CovSel | |

covTest | Computes covariance test for adaptive linear modelling |

CoxBoost | Cox models by likelihood based boosting for a single survival endpoint or competing risks |

coxme | Mixed Effects Cox Models. |

coxphf | Cox regression with Firth's penalized likelihood |

coxphw | Weighted Cox regression |

CoxRidge | Cox models with dynamic ridge penalties |

coxrobust | Robust Estimation in Cox Model |

COZIGAM | Constrained and Unconstrained Zero-Inflated Generalized Additive Models with Model Selection Criterion |

cpa | |

CPE | Concordance Probability Estimates in Survival Analysis |

CpGassoc | Association between Methylation and a phenotype of interest |

CPGchron | Create radiocarbon-dated depth chronologies |

CPHshape | Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model |

cpk | Clinical Pharmacokinetics |

cplexAPI | R Interface to C API of IBM ILOG CPLEX |

cplm | Compound Poisson linear models |

cpm | |

CPMCGLM | Correction of the pvalue after multiple coding |

Cprob | Conditional probability function of a competing event |

CR | Power Calculation for Weighted Log-Rank Tests in Cure Rate Models |

cramer | Multivariate nonparametric Cramer-Test for the two-sample-problem |

crank | Completing ranks |

crantastic | Various R tools for http://crantastic.org/ |

crawl | Fit continuous-time correlated random walk models to animal movement data |

crblocks | Categorical Randomized Block Data Analysis |

crch | |

CreditMetrics | Functions for calculating the CreditMetrics risk model |

crimCV | Group-Based Modelling of Longitudinal Data |

CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |

crmn | CCMN and other noRMalizatioN methods for metabolomics data |

crn | Downloads and Builds datasets for Climate Reference Network |

crossdes | Construction of Crossover Designs |

crosshybDetector | Detection of cross-hybridization events in microarray experiments |

crossmatch | The Cross-match Test |

crp.CSFP | |

crq | Censored Quantile Regression |

crqa | |

crrSC | Competing risks regression for Stratified and Clustered data |

crrstep | Stepwise covariate selection for the Fine & Gray competing risks regression model |

crs | Categorical Regression Splines |

CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |

CrypticIBDcheck | Identifying cryptic relatedness in genetic association studies |

csampling | Functions for Conditional Simulation in Regression-Scale Models |

cSFM | |

cshapes | CShapes Dataset and Utilities |

cslogistic | Conditionally Specified Logistic Regression |

csound | Accessing Csound functionality through R |

CSS | Extract information from an html document with CSS selectors |

csSAM | csSAM - cell-specific Significance Analysis of Microarrays |

ctarma | Estimation and simulation of CARMA(p,q) |

CTFS | The CTFS Large Plot Forest Dynamics Analyses |

cthresh | Complex Wavelet Denoising software. |

cts | Continuous Time Autoregressive Models |

CTT | Classical Test Theory Functions |

ctv | CRAN Task Views |

cubature | Adaptive multivariate integration over hypercubes |

Cubist | Rule- and Instance-Based Regression Modeling |

cudaBayesreg | CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis |

cudaBayesregData | Data sets for the examples used in the package "cudaBayesreg" |

cudia | CUDIA Cross-level Imputation |

CUMP | Analyze Multivariate Phenotypes by Combining Univariate results |

cumplyr | Extends ddply to allow calculation of cumulative quantities. |

cumSeg | Change point detection in genomic sequences |

currentSurvival | Estimation of CCI and CLFS Functions |

curvclust | Curve clustering |

curvetest | The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula... |

curvHDR | curvHDR filtering of flow cytometry samples |

cusp | Cusp Catastrophe Model Fitting Using Maximum Likelihood |

cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |

CvM2SL1Test | L1-version of Cramer-von Mises Two Sample Tests |

CvM2SL2Test | Cramer-von Mises Two Sample Tests |

cvplogistic | Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm |

cvq2 | Calculate the predictive squared correlation coefficient |

CVST | Fast Cross-Validation via Sequential Testing |

CVThresh | Level-Dependent Cross-Validation Thresholding |

cvTools | Cross-validation tools for regression models |

cvxclustr | Splitting methods for convex clustering |

cwhmisc | Miscellaneous Functions for math, plotting, printing, statistics, strings, and tools |

cwm | Cluster Weighted Models by EM algorithm |

cxxfunplus | extend cxxfunction by saving the dynamic shared objects |

cxxPack | R/C++ Tools for Literate Statistical Practice |

cyclones | Cyclone identification |

cyphid | Cycle and Phase Identification for mastication data |

cytoDiv | Cytometric diversity indices |

d3Network | Tools for creating D3 JavaScript network and tree graphs from R |

DAAG | Data Analysis And Graphics data and functions |

DAAGbio | Data Sets and Functions, for demonstrations with expression arrays and gene sequences |

DAAGxtras | Data Sets and Functions, supplementary to DAAG |

dae | Functions useful in the design and ANOVA of experiments |

daewr | Design and Analysis of Experiments with R |

dafs | Data analysis for forensic scientists |

DAGGER | Consensus genetic maps |

dagR | R functions for directed acyclic graphs |

Daim | Diagnostic accuracy of classification models. |

DAKS | Data Analysis and Knowledge Spaces |

DALY | |

DALY | DALY Calculator - A GUI for stochastic DALY calculation in R |

DAMisc | Dave Armstrong's Miscellaneous Functions |

DandEFA | |

darch | Package for deep architectures and Restricted-Bolzmann-Machines |

DART | Denoising Algorithm based on Relevance network Topology |

DARTData | Example data set for DART package |

darts | Statistical Tools to Analyze Your Darts Game |

data.table | Extension of data.frame for fast indexing, fast ordered joins, fast assignment, fast grouping and list columns. |

DatABEL | file-based access to large matrices stored on HDD in binary format |

datacheck | Tools for checking data consistency |

DataCombine | R tools for making it easier to combine and clean data sets. |

dataframe | Fast data frames |

DataFrameConstr | Constrained data frames and homogenous list classes |

dataframes2xls | dataframes2xls writes data frames to xls files |

datamap | A system for mapping foreign objects to R variables and environments |

datamart | Unified access to your data sources |

datamerge | Merging of overlapping and inconsistent data |

dataone | DataONE R Client |

dataonelibs | DataONE R Client Libraries |

dataQualityR | |

datautils | Support functions for packages VBmix, semisupKernelPCA, and patchPlot. |

dataview | Human readable data presentation |

date | Functions for handling dates |

DATforDCEMRI | Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI |

dave | Functions for "Data Analysis in Vegetation Ecology" |

Davies | The Davies quantile function |

dbConnect | Provides a graphical user interface to connect with databases that use MySQL. |

dbEmpLikeGOF | Goodness-of-fit and two sample comparison tests using sample entropy |

dbEmpLikeNorm | Test for joint assessment of normality |

DBGSA | methods of distance-based gene set functional enrichment analysis. |

DBI | R Database Interface |

DBKGrad | Discrete Beta Kernel Graduation of mortality data |

dblcens | Compute the NPMLE of distribution from doubly censored data |

dbmss | Distance-based measures of spatial structures |

dbstats | Distance-based statistics (dbstats) |

dcemri | A Package for Medical Image Analysis |

dcemriS4 | A Package for Medical Image Analysis (S4 implementation) |

dcens | Doubly censoring estimation |

DCGL | Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data |

DCL | |

dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |

dclong.spt | Sequential Permutation Test |

DCluster | Functions for the detection of spatial clusters of diseases |

dcmle | Hierarchical Models Made Easy with Data Cloning |

dcv | Conventional Cross-validation statistics for climate-growth model |

ddalpha | DDalpha-Classifier |

DDD | |

ddepn | Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data. |

ddesolve | Solver for Delay Differential Equations |

DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |

ddst | Data driven smooth test |

DEA | Data Envelopment Analysis. |

deal | Learning Bayesian Networks with Mixed Variables |

deamer | Deconvolution density estimation with adaptive methods for a variable prone to measurement error |

debug | MVB's debugger for R |

decctools | Get energy data from the UK Dept of Energy and Climate Change |

DECIDE | DEComposition of Indirect and Direct Effects |

decon | Deconvolution Estimation in Measurement Error Models |

Deducer | Deducer |

DeducerExtras | Additional dialogs and functions for Deducer |

DeducerMMR | A Deducer plugin for moderated multiple regressions and simple slopes analysis |

DeducerPlugInExample | Deducer Plug-in Example |

DeducerPlugInScaling | Reliability and factor analysis plugin |

DeducerSpatial | Deducer for spatial data analysis |

DeducerSurvival | Add Survival Dialogue to Deducer |

DeducerText | Deducer GUI for Text Data |

deducorrect | deducorrect: Deductive correction, deductive imputation, and deterministic correction. |

Defaults | Create Global Function Defaults |

degenes | Detection of differentially expressed genes. |

degreenet | Models for Skewed Count Distributions Relevant to Networks |

Delaporte | Statistical functions for the Delaporte distribution |

deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation. |

delftfews | delftfews R extensions |

delt | Estimation of multivariate densities with adaptive histograms |

deltaPlotR | Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method |

Demerelate | Functions to calculate relatedness on diploid genetic data |

DEMEtics | Evaluating the genetic differentiation between populations based on Gst and D values. |

demi | Differential Expression from Multiple Indicators |

demogR | Analysis of age-structured demographic models |

demography | Forecasting mortality, fertility, migration and population data |

demoKde | |

dendroextras | Extra functions to cut, label and colour dendrogram clusters |

DendSer | Dendrogram seriation: ordering for visualisation |

denpro | Visualization of multivariate, functions, sets, and data |

denstrip | Density strips and other methods for compactly illustrating distributions |

DEoptim | Global optimization by Differential Evolution |

Depela | Depela |

depend.truncation | |

depmix | Dependent Mixture Models |

depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |

depth | Depth functions tools for multivariate analysis |

depthTools | Depth Tools Package |

descr | Descriptive statistics |

DescribeDisplay | R interface to DescribeDisplay (GGobi plugin) |

deseasonalize | Optimal deseasonalization for geophysical time series using AR fitting |

Design | Design Package |

designGG | Computational tool for designing genetical genomics experiments. |

DesignPatterns | Design Patterns in R to build reusable object-oriented software |

desirability | Desirabiliy Function Optimization and Ranking |

desire | Desirability functions in R |

deSolve | General Solvers for Initial Value Problems of Ordinary Differential Equations (ODE), Partial Differential Equations (PDE), Differential Algebraic Equations (DAE), and Delay Differential Equations (... |

detect | Analyzing Wildlife Data with Detection Error |

deTestSet | Testset for differential equations |

detrendeR | Start the detrendeR Graphical User Interface (GUI) |

DetSel | A computer program to detect markers responding to selection |

devEMF | EMF graphics output device |

Devore5 | Data sets from Devore's "Prob and Stat for Eng (5th ed)" |

Devore6 | Data sets from Devore's "Prob and Stat for Eng (6th ed)" |

Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |

devtools | Tools to make developing R code easier |

df2json | Convert a dataframe to JSON |

dfcrm | Dose-finding by the continual reassessment method |

dfoptim | Derivative-free Optimization |

dglars | Differential Geometric LARS (dgLARS) method |

dglm | Double generalized linear models |

dgmb | dgmb Simulating data for PLS structural models |

dgof | Discrete Goodness-of-Fit Tests |

dhglm | Double Hierarchical Generalized Linear Models |

DiagnosisMed | Diagnostic test accuracy evaluation for medical professionals. |

diagram | Functions for visualising simple graphs (networks), plotting flow diagrams |

DiagTest3Grp | Diagnostic test summary measures for three ordinal groups |

diamonds | Analysis and sampling grids from diamond partitions |

dice | Calculate probabilities of various dice-rolling events |

DiceDesign | Designs of Computer Experiments |

DiceEval | Construction and evaluation of metamodels |

DiceKriging | Kriging methods for computer experiments |

DiceOptim | Kriging-based optimization for computer experiments |

DiceView | Plot methods for computer experiments design and surrogate. |

dichromat | Color Schemes for Dichromats |

dicionariosIBGE | Dictionaries for reading microdata surveys from IBGE |

DICOM | Import medical imaging data using the DICOM Standard |

dielectric | Defines some physical constants and dielectric functions commonly used in optics, plasmonics. |

DierckxSpline | R companion to "Curve and Surface Fitting with Splines" |

diff | Statistics: What's the Difference? |

diffdepprop | Calculates Confidence Intervals for two Dependent Proportions |

diffEq | Functions from the book Solving Differential Equations in R |

diffractometry | Baseline identification and peak decomposition for x-ray diffractograms |

diffusionMap | Diffusion map |

DIFlasso | |

difR | Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics |

digeR | GUI tool for analyzing 2D DIGE data |

digest | Create cryptographic hash digests of R objects |

Digiroo2 | An application programming interface for generating null models of social contacts based on individuals' space use |

digitize | digitize : a plot digitizer in R |

DIME | DIME (Differential Identification using Mixture Ensemble) |

dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors |

diptest | Hartigan's dip test statistic for unimodality - corrected code |

DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |

directlabels | Direct labels for multicolor plots in lattice or ggplot2 |

directPA | |

dirichlet | Dirichlet model of consumer buying behavior for marketing research |

DirichletReg | Dirichlet Regression in R |

dirmult | Estimation in Dirichlet-Multinomial distribution. |

disclap | Discrete Laplace Exponential Family |

disclapmix | Discrete Laplace mixture inference using the EM algorithm |

DiscreteInverseWeibull | Discrete inverse Weibull distribution |

DiscreteLaplace | |

discreteMTP | Multiple testing procedures for discrete test statistics |

discreteRV | Functions to create and manipulate discrete random variables |

DiscreteWeibull | Discrete Weibull distribution |

discretization | Data preprocessing, discretization for classification. |

discrimARTs | Discrimination of Alternative Reproductive Tactics (ARTs). |

DiscriMiner | Tools of the Trade for Discriminant Analysis |

diseasemapping | Calculate observed and expected disease incidence counts from a case file and population data. |

dismo | Species distribution modeling |

disp2D | 2D Hausdorff and Simplex Dispersion Orderings |

displayHTS | displayHTS |

dispmod | Dispersion models |

Distance | A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations. |

DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |

distfree.cr | Distribution-free confidence region (distfree.cr) |

distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |

distory | Distance Between Phylogenetic Histories |

distr | Object oriented implementation of distributions |

distrDoc | Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse |

distrEllipse | S4 classes for elliptically contoured distributions |

distrEx | Extensions of package distr |

distributions | Probability distributions based on TI-83 Plus |

DistributionUtils | Distribution Utilities |

distrMod | Object oriented implementation of probability models |

distrRmetrics | Package distr classes for distributions from Rmetrics |

distrSim | Simulation classes based on package distr |

distrTeach | Extensions of package distr for teaching Stochastics/Statistics in secondary school |

distrTEst | Estimation and Testing classes based on package distr |

divagis | Provides tools for quality checks of georeferenced plant species accessions. |

diveMove | Dive analysis and calibration |

diversitree | diversitree: comparative phylogenetic analyses of diversification |

diveRsity | Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In. |

DiversitySampler | Functions for re-sampling a community matrix to compute diversity indices at different sampling levels. |

divisors | Find the divisors of a number |

DivMelt | HRM Diversity Assay Analysis Tool |

dixon | Nearest Neighbour Contingency Table Analysis |

dkDNA | Diffusion kernels on a set of genotypes. |

dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |

dlmap | Detection Localization Mapping for QTL |

dlmodeler | Generalized Dynamic Linear Modeler |

dlnm | Distributed Lag Non-linear Models |

dma | Dynamic model averaging |

DMR | Delete or Merge Regressors for linear model selection. |

dmRTools | Data Management Reporting Tool Version 1.0.1 |

dmt | Dependency Modeling Toolkit |

DMwR | Functions and data for "Data Mining with R" |

dna | Differential Network Analysis |

DNAtools | Tools for analysing forensic genetic DNA data |

DnE | DnE(Distribution and Equation) |

DOBAD | Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains |

doBy | doBy - Groupwise summary statistics, general linear contrasts, population means (least-squares-means), and other utilities |

Dodge | Functions for Acceptance Sampling Ideas originated by H.F. Dodge |

DoE.base | Full factorials, orthogonal arrays and base utilities for DoE packages |

DoE.wrapper | Wrapper package for design of experiments functionality |

doMC | Foreach parallel adaptor for the multicore package |

Dominance | ADI (average dominance index) and social network graphs with dual directions |

doMPI | Foreach parallel adaptor for the Rmpi package |

doParallel | Foreach parallel adaptor for the parallel package |

doRedis | Foreach parallel adapter for the rredis package |

doRNG | Generic Reproducible Parallel Backend for foreach Loops |

DoseFinding | Planning and Analyzing Dose Finding experiments |

DOSim | Disease Analysis toolkit for gene set; Computation of similarities between DO terms and disease similarity between gene products; Module detection among the gene set and multilayer annotation for... |

doSMP | Foreach parallel adaptor for the revoIPC package |

doSNOW | Foreach parallel adaptor for the snow package |

dosresmeta | |

dostats | |

downloader | A package for downloading files over http and https |

dpa | Dynamic Path Approach |

dpcR | |

dpglasso | Primal Graphical Lasso |

dplR | Dendrochronology Program Library in R |

DPM.GGM | Dirichlet Process Mixtures (DPM) and related models using Gaussian Graphical Models (GGM) for Sparse covariance estimation in heterogeneous samples |

dpmixsim | Dirichlet Process Mixture model simulation for clustering and image segmentation |

DPpackage | Bayesian nonparametric modeling in R |

dprep | Data preprocessing and visualization functions for classification |

DPw | Semiparametric Bayesian procedure for selecting a subset containing the weakest species with an acceptably high probability. |

dr | Methods for dimension reduction for regression |

drawExpression | Visualising R syntax through graphics |

drc | Analysis of dose-response curves |

drfit | Dose-response data evaluation |

DRI | DR-Integrator |

driftsel | Distinguishing drift and natural selection as causes of phenotypic differentiation |

drm | Regression and association models for repeated categorical data |

drmdel | |

ds | Descriptive Statistics |

dsample | Discretization-based Direct Random Sample Generation |

DSBayes | |

dse | Dynamic Systems Estimation (time series package) |

dse1 | DSE (unbundled transition package). |

dse2 | DSE (unbundled transition package). |

DSL | Distributed Storage and List |

dsm | Density surface modelling of distance sampling data |

DSpat | Spatial modelling for distance sampling data |

DTComPair | Comparison of Binary Diagnostic Tests in a Paired Study Design |

DTDA | Doubly truncated data analysis |

dti | Analysis of diffusion weighted imaging (DWI) data |

DTK | Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes |

DTMCPack | Suite of functions related to discrete-time discrete-state Markov Chains |

DTR | Estimation and comparison of dynamic treatment regimes |

dtt | Discrete Trigonometric Transforms |

dtw | Dynamic time warping algorithms |

dummies | Create dummy/indicator variables flexibly and efficiently |

dupiR | Bayesian inference from count data using discrete uniform priors |

dvfBm | Discrete variations of a fractional Brownian motion |

dvn | Access to The Dataverse Network APIs |

DWD | DWD implementation based on A IPM SOCP solver |

dyad | Analysis of dyadic observational data |

dyn | Time Series Regression |

dynamicGraph | dynamicGraph |

dynamicTreeCut | Methods for detection of clusters in hierarchical clustering dendrograms. |

dynamo | Dynamic Models |

dynaTree | Dynamic trees for learning and design |

DynClust | non-parametric denoising and clustering method of noisy images both indexed by time and space |

dynCorr | Dynamic Correlation Package |

dynGraph | Interactive visualization of dataframes and factorial planes |

dynlm | Dynamic Linear Regression |

dynpred | Companion package to "Dynamic Prediction in Clinical Survival Analysis" |

dynsurv | Dynamic models for survival data |

e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |

eaf | Plots of the Empirical Attainment Function |

earlywarnings | Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries |

earth | Multivariate Adaptive Regression Spline Models |

easi | EASI Demand System Estimation |

EasyABC | EasyABC: performing efficient approximate Bayesian computation sampling schemes |

easyanova | Analysis of variance and other important complementary analyzes |

EasyHTMLReport | EasyHTMLReport |

easystab | Clustering Perturbation Stability Analysis |

EasyUpliftTree | Easy Uplift Tree Model |

eba | Elimination-by-Aspects (EBA) Models |

ebal | Entropy reweighting to create balanced samples |

EbayesThresh | Empirical Bayes Thresholding and Related Methods |

ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |

EBMAforecast | Ensemble BMA Forecasting |

EBS | Exact Bayesian Segmentation |

Ecdat | Data sets for econometrics |

ecespa | Functions for spatial point pattern analysis |

eco | R Package for Ecological Inference in 2x2 Tables |

ecodist | Dissimilarity-based functions for ecological analysis |

EcoHydRology | A community modeling foundation for Eco-Hydrology. |

ecolMod | "A practical guide to ecological modelling - using R as a simulation platform" |

ecoreg | Ecological regression using aggregate and individual data |

ecosim | Toolbox for Aquatic Ecosystem Modeling |

EcoTroph | |

ecp | Nonparametric Multiple Change Point Analysis of Multivariate Data |

EDanalysis | A R Package For Gene Enrichment Disequilibrium Analysis |

edcc | Economic Design of Control Charts |

edci | Edge Detection and Clustering in Images |

edesign | Maximum entropy sampling |

EDISON | Software for network reconstruction and changepoint detection. |

editrules | R package for parsing, applying, and manipulating data cleaning rules |

EDR | Estimation of the effective dimension reduction (EDR) space |

edrGraphicalTools | Provides tools for dimension reduction methods |

edtdbg | Integrating R's debug() with Your Text Editor |

eeptools | Convenience functions for education data |

EffectiveDose | Estimation of the Effective Dose including Bootstrap confidence intervals |

effects | Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models |

EffectsRelBaseline | |

EffectStars | Visualization of Categorical Response Models |

effsize | Functions for computing effect sizes |

egarch | EGARCH simulation and fitting |

egonet | Tool for ego-centric measures in Social Network Analysis |

eha | Event History Analysis |

eHOF | Extended and enhanced Hierarchical Logistic Regression models (so called Huisman-Olff-Fresco models). |

eigendog | EigenDog |

eigeninv | Generates (dense) matrices that have a given set of eigenvalues |

eigenmodel | Semiparametric factor and regression models for symmetric relational data |

eigenprcomp | Computes confidence intervals for principal components |

EILA | |

eiPack | eiPack: Ecological Inference and Higher-Dimension Data Management |

eive | An algorithm for reducing errors-in-variable bias in simple linear regression |

EL | Two-sample Empirical Likelihood |

el.convex | empirical likelihood ratio tests for means |

elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |

elec | Collection of functions for statistical election audits |

elec.strat | Functions for election audits using stratified random samples |

ElectroGraph | Enhanced routines for plotting and analyzing valued relational data. |

ElemStatLearn | Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman. |

elliplot | |

ellipse | Functions for drawing ellipses and ellipse-like confidence regions |

elliptic | elliptic functions |

elmNN | Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks ) |

elrm | Exact Logistic Regression via MCMC |

em2 | A package for computing reading time measures for psycholinguistics. |

EMA | Easy Microarray data Analysis |

EMC | Evolutionary Monte Carlo (EMC) algorithm |

EMCC | Evolutionary Monte Carlo (EMC) methods for clustering |

EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |

EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |

emdbook | Ecological models and data (book support) |

emdist | Earth Mover's Distance |

emg | Exponentially Modified Gaussian (EMG) Distribution |

EMJumpDiffusion | EM-Algorithm for Jump Diffusion processes |

emma | Evolutionary model-based multiresponse approach |

EMMAgeo | End-member modelling algorithm and supporting functions for grain-size analysis |

emme2 | Read and Write to an EMME/2 databank |

emoa | Evolutionary Multiobjective Optimization Algorithms |

empiricalBayes | |

emplik | Empirical likelihood ratio for censored/truncated data |

emplik2 | Empirical-likelihood test (two-sample, censored data) |

EmpLikeGOF | Goodness of Fit Test for Empirical Likelihood |

EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data |

emu | Interface to the Emu Speech Database System |

emudata | emudata - datasets for the emu package |

emulator | Bayesian emulation of computer programs |

EMV | Estimation of Missing Values for a Data Matrix |

EMVC | |

ENA | Ensemble Network Aggregation |

enaR | Tools for ecological network analysis (ena) in R |

endogMNP | R Package for Fitting Multinomial Probit Models with Endogenous Selection |

endorse | |

energy | E-statistics (energy statistics) |

english | Translate integers into English |

EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |

ENmisc | Neuwirth miscellaneous |

EnQuireR | A package dedicated to questionnaires |

enRich | An R package for the analysis of multiple ChIP-seq data |

enrichvs | Enrichment assessment of virtual screening approaches |

ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |

ensembleMOS | Ensemble Model Output Statistics |

entropart | |

entropy | Estimation of Entropy, Mutual Information and Related Quantities |

envelope | Envelope normality test |

enviPat | Isotope pattern, profile and centroid calculation for mass spectrometry. |

EnvNicheR | Environmental niche |

epade | Easy Plots |

Epi | A package for statistical analysis in epidemiology. |

epibase | basic tools for the analysis of disease outbreaks. |

epibasix | Elementary Epidemiological Functions for Epidemiology and Biostatistics |

epicalc | Epidemiological calculator |

EpiContactTrace | Epidemiological tool for contact tracing |

EpiEstim | EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves. |

EpiModel | Mathematical Modeling of Infectious Disease |

epinet | A collection of epidemic/network-related tools |

epiR | An R package for the analysis of epidemiological data |

epitools | Epidemiology Tools |

epoc | EPoC (Endogenous Perturbation analysis of Cancer) |

epr | Easy polynomial regression |

epsi | Edge Preserving Smoothing for Images |

EQL | Extended-Quasi-Likelihood-Function (EQL) |

eqs2lavaan | EQS Output Conversion to lavaan Functions |

eqtl | Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis |

equate | Statistical Methods for Test Score Equating |

equateIRT | Direct, chain and average equating coefficients with standard errors using IRT methods. |

EquiNorm | Normalize expression data using equivalently expressed genes |

equivalence | Provides tests and graphics for assessing tests of equivalence |

erboost | |

erer | Empirical Research in Economics with R |

ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |

ergm.count | Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges |

ergm.graphlets | |

ergm.userterms | User-specified terms for the statnet suite of packages |

ergmharris | Local Health Department network data set |

eRm | Extended Rasch Modeling |

ES | |

esd4all | esd4all |

ESG | ESG - A package for asset projection |

esotericR | esotericR articles from lemnica.com |

ESPRESSO | Power Analysis and Sample Size Calculation |

EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |

estout | Estimates Output |

EstSimPDMP | Estimation of the jump rate and simulation for piecewise-deterministic Markov processes |

etable | Easy Table |

ETAS | Modeling earthquake data using Epidemic Type Aftershock Sequence model |

ETC | Equivalence to control |

ETLUtils | Utility functions to execute standard ETL operations (using package ff) on large data. |

etm | Empirical Transition Matrix |

EuclideanMaps | Displays Euclidean Maps |

EvalEst | Dynamic Systems Estimation - extensions |

evaluate | Parsing and evaluation tools that provide more details than the default. |

EvCombR | |

evd | Functions for extreme value distributions |

evdbayes | Bayesian Analysis in Extreme Value Theory |

eVenn | eVenn: A powerful tool to compare lists and draw Venn diagrams. |

events | Store and manipulate event data |

eventstudies | Event study and extreme event analysis |

EVER | Estimation of Variance by Efficient Replication |

evir | Extreme Values in R |

evmix | Extreme Value Mixture Modelling and Threshold Estimation |

evobiR | |

evora | |

evtree | Evolutionary Learning of Globally Optimal Trees |

Exact | Unconditional Exact Test |

exact2x2 | Exact Conditional Tests and Confidence Intervals for 2x2 tables |

exactci | Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases |

ExactCIdiff | Inductive Confidence Intervals for the difference between two proportions |

exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |

exactmaxsel | Maximally selected statistics for binary response variables - Exact methods |

ExactNumCI | Exact Confidence Interval for binomial proportions |

ExactPath | Exact solution paths for regularized LASSO regressions with L_1 penalty |

exactRankTests | Exact Distributions for Rank and Permutation Tests |

ExactSampling | ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm. |

exams | Automatic Generation of Exams in R |

ExceedanceTools | Confidence Regions for Exceedance Regions and Contour Lines |

excel.link | Convenient way to work with data in Microsoft Excel |

excursions | |

ExomeCNV | Detect CNV and LOH from Exome Sequencing Data |

ExomeDepth | |

expands | |

ExPD2D | Exact Computation of Bivariate Projection Depth Based on Fortran Code |

ExpDes | Experimental Designs package |

ExpDes.pt | Pacote Experimental Designs (Portuguese) |

expectreg | Expectile and Quantile Regression |

experiment | experiment: R package for designing and analyzing randomized experiments |

expert | Modeling without data using expert opinion |

expm | Matrix exponential |

expoRkit | Expokit in R |

ExPosition | Exploratory analysis with the singular value decomposition. |

expoTree | Calculate density dependent likelihood of a phylogenetic tree |

expsmooth | Data sets from "Forecasting with exponential smoothing" |

exptest | Tests for Exponentiality |

exsic | Convenience functions for botanist to create exsiccatae indices |

extfunnel | Additional Funnel Plot Augmentations |

extraBinomial | Extra-binomial approach for pooled sequencing data |

extracat | Categorical Data Analysis and Visualization |

extrafont | Tools for using fonts |

extrafontdb | Package for holding the database for the extrafont package |

extraTrees | ExtraTrees method |

extRemes | Extreme value toolkit. |

extremevalues | Univariate outlier detection |

eyetracking | Eyetracking Helper Functions |

ez | Easy analysis and visualization of factorial experiments. |

ezglm | selects significant non-additive interaction between two variables using fast GLM implementation. |

ezsim | provide an easy to use framework to conduct simulation |

FacPad | Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment |

factas | Data Mining Methods |

FactMixtAnalysis | Factor Mixture Analysis with covariates |

FactoClass | Combination of Factorial Methods and Cluster Analysis |

FactoMineR | Multivariate Exploratory Data Analysis and Data Mining with R |

factorQR | Bayesian quantile regression factor models |

factualR | thin wrapper for the Factual.com server API |

FAdist | Distributions that are sometimes used in hydrology |

Fahrmeir | Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz |

fail | File Abstraction Interface Layer (FAIL) mimicking a key-value store |

FAiR | Factor Analysis in R |

fairselect | Feature Annealed Independence Rules (demo) |

faisalconjoint | |

fame | Interface for FAME time series database |

Familias | Probabilities for Pedigrees given DNA data |

FAmle | Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions |

FAMT | Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data |

fanc | Penalized likelihood factor analysis via nonconvex penalty |

fANCOVA | Nonparametric Analysis of Covariance |

fanovaGraph | Building Kriging models from FANOVA graphs |

fanplot | Visualisation of sequential probability distributions using fan charts. |

FAOSTAT | A complementary package to the FAOSTAT database and the Statistical Yearbook of the Food and Agricultural Organization of the United Nations. |

faoutlier | Influential case detection methods for factor analysis and SEM |

far | Modelization for Functional AutoRegressive processes |

faraway | Functions and datasets for books by Julian Faraway. |

fArma | ARMA Time Series Modelling |

farmR | Mixed Integer model of Arable Farms |

farsi | Translate integers into persian |

fAsianOptions | EBM and Asian Option Valuation |

fAssets | Rmetrics - Assets Selection and Modelling |

fast | Implementation of the Fourier Amplitude Sensitivity Test (FAST) |

fastclime | A fast solver for parameterized lp problems and constrained l1 minimization approach to sparse precision matrix estimation |

fastcluster | Fast hierarchical clustering routines for R and Python |

fastcox | Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm |

fastGHQuad | Fast Rcpp implementation of Gauss-Hermite quadrature |

fastICA | FastICA Algorithms to perform ICA and Projection Pursuit |

FastImputation | Learn from training data then quickly fill in missing data. |

fastmatch | Fast match() function |

FastPCS | R package to compute the FastPCS outlyingness index. |

fastR | Data sets and utilities for Foundations and Applications of Statistics by R Pruim |

FastRCS | R package to compute the FastRCS Algorithm |

FastRWeb | Fast Interactive Framework for Web Scripting Using R |

fastSOM | Fast Calculation of Spillover Measures |

fastVAR | fastVAR |

favir | Formatted Actuarial Vignettes in R |

FAwR | |

FAwR | Functions and Datasets for "Forest Analytics with R". |

fBasics | Rmetrics - Markets and Basic Statistics |

fbati | Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families |

FBFsearch | Algorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors |

FBN | FISH Based Normalization and Copy Number inference of SNP microarray data |

fBonds | Bonds and Interest Rate Models |

fbRanks | Association Football (Soccer) Ranking via Poisson Regression |

fCalendar | Chronological and Calendarical Objects |

fCertificates | fCertificates - Basics of Certificates and Structured Products Valuation |

fclust | Fuzzy clustering |

fCopulae | Rmetrics - Dependence Structures with Copulas |

fcros | FCROS for detecting differentially expressed genes |

FD | Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology |

fda | Functional Data Analysis |

fda.usc | Functional Data Analysis and Utilities for Statistical Computing (fda.usc) |

fdakma | Clustering and alignment of a functional dataset |

fdaMixed | Functional data analysis in a mixed model framework |

fdasrvf | Elastic Functional Data Analysis |

fdatest | Interval Testing Procedure for functional data |

fdim | Functions for calculating fractal dimension. |

fdrci | Permutation-based FDR Point and Confidence Interval Estimation |

fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |

fds | Functional data sets |

fdth | Frequency Distribution Tables, Histograms and Poligons |

FeaLect | Scores features for Feature seLection |

feature | Feature significance for multivariate kernel density estimation |

features | Feature Extraction for Discretely-Sampled Functional Data |

fechner | Fechnerian Scaling of Discrete Object Sets |

fEcofin | Economic and Financial Data Sets |

FeedbackTS | |

femmeR | Output analysis of FEMME model results |

FEST | Identification of Family Relations using linked markers |

fExoticOptions | Exotic Option Valuation |

fExpressCertificates | |

fExtremes | Rmetrics - Extreme Financial Market Data |

ff | memory-efficient storage of large data on disk and fast access functions |

ffbase | Basic statistical functions for package ff |

FFD | Freedom From Disease |

FField | Force field simulation for a set of points |

ffmanova | Fifty-fifty MANOVA |

fftw | Fast FFT and DCT based on FFTW |

fftwtools | Wrapper for fftw3: includes 1-D, univariate and multivariate, and 2-D transform |

fgac | Generalized Archimedean Copula |

FGalgorithm | Flury and Gautschi algorithms |

fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |

FGN | Fractional Gaussian Noise and hyperbolic decay time series model fitting |

fgof | Fast Goodness-of-fit Test |

fgui | Function GUI |

FHtest | Tests for right and interval-censored survival data based on the Fleming-Harrington class |

FI | Provide functions for forest inventory calculations |

FIAR | Functional Integration Analysis in R |

fields | Tools for spatial data |

FieldSim | Random fields simulations |

filehash | Simple key-value database |

filehashSQLite | Simple key-value database using SQLite |

filterviewR | Get started easily with FilterView from R. |

fImport | Rmetrics - Economic and Financial Data Import |

financial | Solving financial problems in R |

FinancialInstrument | Financial Instrument Model Infrastructure for R |

FinAsym | Classifies implicit trading activity from market quotes and computes the probability of informed trading |

FinCal | Time Value of Money, time series analysis and Computational Finance |

FindAllRoots | Find all root(s) of the equation and Find root(s) of the equation by dichotomy |

FindIt | R Package for Finding Heterogeneous Treatment Effects |

FindMinIC | |

finebalance | Approximate fine balance when exact fine balance is not achievable |

fingerprint | Functions to operate on binary fingerprint data |

FinTS | Companion to Tsay (2005) Analysis of Financial Time Series |

FisherEM | The Fisher-EM algorithm |

fisheyeR | Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R |

fishmethods | Fishery Science Methods and Models in R |

fishmove | Prediction of Fish Movement Parameters |

fit.models | fit.models |

fit4NM | NONMEM platform |

FitAR | Subset AR Model Fitting |

FitARMA | FitARMA: Fit ARMA or ARIMA using fast MLE algorithm |

fitdistrplus | Help to fit of a parametric distribution to non-censored or censored data |

fitDRC | Fitting Density Ratio Classes |

FITSio | FITS (Flexible Image Transport System) utilities |

fitTetra | fitTetra is an R package for assigning tetraploid genotype scores |

FKBL | fuzzy knowledge base learning |

FKF | Fast Kalman Filter |

flare | Family of Lasso Regression |

flashClust | Implementation of optimal hierarchical clustering |

FLCore | |

FLEDA | |

flexclust | Flexible Cluster Algorithms |

flexCrossHaz | Flexible crossing hazards in the Cox model |

flexCWM | Flexible Cluster-Weighted Modeling |

flexmix | Flexible Mixture Modeling |

FlexParamCurve | Tools to Fit Flexible Parametric Curves |

flexsurv | Flexible parametric survival models |

flip | Multivariate Permutation Tests |

FLLat | Fused Lasso Latent Feature Model |

flora | flora: taxonomical information on flowering species that occur in Brazil |

flsa | Path algorithm for the general Fused Lasso Signal Approximator |

flubase | Baseline of mortality free of influenza epidemics |

FluOMatic | Estimation of background-subtracted fluorescence data |

Flury | Data Sets from Flury, 1997 |

flux | Flux rate calculation from dynamic closed chamber measurements |

fma | Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998) |

FME | A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis. |

fmri | Analysis of fMRI experiments |

fmsb | Functions for medical statistics book with some demographic data |

FMStable | Finite Moment Stable Distributions |

fmt | Variance estimation of FMT method (Fully Moderated t-statistic) |

fMultivar | Multivariate Market Analysis |

FNN | Fast Nearest Neighbor Search Algorithms and Applications |

fNonlinear | Nonlinear and Chaotic Time Series Modelling |

foba | greedy variable selection |

fontcm | Computer Modern font for use with extrafont package |

foodweb | visualisation and analysis of food web networks |

fOptions | Basics of Option Valuation |

forams | Foraminifera and Community Ecology Analyses |

foreach | Foreach looping construct for R |

ForeCA | ForeCA - Forecastable Component Analysis |

forecast | Forecasting functions for time series and linear models |

forecasting | |

foreign | Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ... |

forensic | Statistical Methods in Forensic Genetics |

forensim | Statistical tools for the interpretation of forensic DNA mixtures |

ForImp | Imputation of missing values through a forward imputation algorithm |

fork | R functions for handling multiple processes. |

FormalSeries | Elementary arithemtic in formal series rings |

formatR | Format R Code Automatically |

Formula | Extended Model Formulas |

formula.tools | Utilities for working with formulas, expressions, calls and other R objects |

FortranCallsR | |

fortunes | R Fortunes |

forward | Forward search |

fossil | Palaeoecological and Palaeogeographical Analysis Tools |

FourierDescriptors | Generate images using Fourier descriptors. |

FourScores | FourScores - A game for two players |

fpc | Flexible procedures for clustering |

fpca | Restricted MLE for Functional Principal Components Analysis |

fPortfolio | Rmetrics - Portfolio Selection and Optimization - ebook available at www.rmetrics.org |

fpow | Computing the noncentrality parameter of the noncentral F distribution |

fpp | Data for "Forecasting: principles and practice" |

fptdApprox | Approximation of first-passage-time densities for diffusion processes. |

fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |

fracprolif | Fraction Proliferation via a quiescent growth model |

FracSim | Simulation of L |

fractal | Fractal Time Series Modeling and Analysis |

fractaldim | Estimation of fractal dimensions |

fractalrock | Generate fractal time series with non-normal returns distribution |

FRACTION | Numeric number into fraction |

frailtyHL | Frailty Models via H-likelihood |

frailtypack | General Frailty models: shared, joint and nested frailty models with prediction |

FRAPO | Financial Risk Modelling and Portfolio Optimisation with R |

FRB | Fast and Robust Bootstrap |

FRBData | Download interest rate data from FRB's website |

frbf | Implementation of the "Flexible kernels for RBF network" algorithm |

frbs | Fuzzy Rule-based Systems for Classification and Regression Tasks |

FRCC | Fast Regularized Canonical Correlation Analysis |

freeknotsplines | Free-Knot Splines |

fRegression | Regression Based Decision and Prediction |

FREQ | |

freqMAP | Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate |

FrF2 | Fractional Factorial designs with 2-level factors |

FrF2.catlg128 | Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words |

frmqa | The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance |

frontier | Stochastic Frontier Analysis |

frontiles | Partial frontier efficiency analysis |

frt | Full Randomization Test |

fscaret | Automated caret feature selection |

FSelector | Selecting attributes |

fSeries | Financial Time Series Objects |

fso | Fuzzy Set Ordination |

FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data |

ftnonpar | Features and Strings for Nonparametric Regression |

fTrading | Technical Trading Analysis |

fts | R interface to tslib (a time series library in c++) |

ftsa | Functional time series analysis |

fugeR | FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic. |

fume | |

fun | Use R for Fun |

FunCluster | Functional Profiling of Microarray Expression Data |

Funclustering | |

FuncMap | Hive Plots of R Package Function Calls |

functional | Curry, Compose, and other higher-order functions |

FunctSNP | FunctSNP - SNP annotation data methods and species specific database builder |

fUnitRoots | Trends and Unit Roots |

FunNet | Integrative Functional Analysis of Transcriptional Networks |

FusedPCA | |

futile | Futile base package |

futile.any | Futile library to provide some polymorphic operations |

futile.logger | A logging library for R |

futile.matrix | Futile matrix utilities |

futile.options | Futile options management |

futile.paradigm | A framework for working in a functional programming paradigm in R |

fUtilities | Function Utilities |

fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |

FuzzyNumbers | Tools to deal with fuzzy numbers |

fuzzyOP | Fuzzy numbers and the main mathematical operations |

fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |

FuzzyStatProb | Fuzzy stationary probabilities from a sequence of observations of an unknown Markov chain |

FuzzyToolkitUoN | Type 1 Fuzzy Logic Toolkit |

fwdmsa | Forward search for Mokken scale analysis |

FWDselect | Selecting variables in regression models |

fwi.fbp | Fire Weather Index System and Fire Behaviour Prediction System Calculations |

fwsim | |

fxregime | Exchange Rate Regime Analysis |

g.data | Delayed-Data Packages |

G.S. | Uses Grieg-Smith method on 2 dimentional spatial data |

G1DBN | A package performing Dynamic Bayesian Network inference. |

G2Sd | Grain-size Statistics and Description of Sediment |

GA | Genetic Algorithms |

GA4Stratification | A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling |

GABi | |

GAD | GAD: Analysis of variance from general principles |

gafit | Genetic Algorithm for Curve Fitting |

gains | Gains Table Package |

GAIPE | Graphical Extension with Accuracy in Parameter Estimation (GAIPE) |

galts | Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation |

gam | Generalized Additive Models |

gamair | Data for "GAMs: An Introduction with R" |

gambin | |

GAMBoost | Generalized linear and additive models by likelihood based boosting |

gamboostLSS | Boosting Methods for GAMLSS Models |

gamclass | Functions and data for a course on modern regression and classification |

GAMens | Applies GAMbag, GAMrsm and GAMens ensemble classifiers for binary classification |

games | Statistical Estimation of Game-Theoretic Models |

gamesNws | Playing games using a NWS Server |

gamlr | Gamma Lasso Regression |

gamlss | Generalised Additive Models for Location Scale and Shape. |

gamlss.add | GAMLSS Additive. |

gamlss.cens | Fitting an interval response variable using gamlss.family distributions |

gamlss.data | GAMLSS Data. |

gamlss.demo | Demos for GAMLSS |

gamlss.dist | Distributions to be used for GAMLSS modelling. |

gamlss.mx | A GAMLSS add on package for fitting mixture distributions |

gamlss.nl | Fitting non linear parametric GAMLSS models |

gamlss.tr | Generating and fitting truncated (gamlss.family) distributions |

gamlss.util | GAMLSS Utilities. |

gamm4 | Generalized additive mixed models using mgcv and lme4 |

gammSlice | Generalized additive mixed model analysis via slice sampling |

GANPA | Gene Association Network-based Pathway Analysis |

GANPAdata | The GANPA Datasets Package |

gaoptim | Genetic Algorithm optimization for real-based and permutation-based problems |

gap | Genetic analysis package |

gaussDiff | Difference measures for multivariate Gaussian probability density functions |

gausspred | Bayesian Classification with High-dimensional Gaussian Profiles |

gaussquad | Collection of functions for Gaussian quadrature |

gazetools | Gaze Tools |

gb | Generalize Lambda Distribution and Generalized Bootstrapping |

GB2 | Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation. |

gbev | Gradient Boosted Regression Trees with Errors-in-Variables |

gbm | Generalized Boosted Regression Models |

gbRd | Utilities for processing Rd objects and files |

gbs | Package for Generalized Birnbaum-Saunders Distributions |

gcbd | GPU/CPU Benchmarking in Debian-based systems |

gcdnet | A generalized coordinate descent (GCD) algorithm for computing the solution path of the hybrid Huberized support vector machine (HHSVM) and its generalization. |

gcExplorer | Graphical Cluster Explorer |

gcl | Compute a fuzzy rules or tree classifier from data |

gclus | Clustering Graphics |

gcmr | Gaussian Copula Marginal Regression |

gcmrec | General class of models for recurrent event data |

gcolor | Provides an Inequation Algorithm Function and a solution to import DIMACS files. |

gcookbook | Data for "R Graphics Cookbook" |

gdata | Various R programming tools for data manipulation |

GDD | GD device for creating bitmap graphics as jpeg, png or gif files using gd library |

GDELTtools | |

gdimap | Generalized Diffusion Magnetic Resonance Imaging |

gdistance | distances and routes on geographical grids |

gdor | Generic Directions of Recession |

gdsfmt | CoreArray Genomic Data Structure (GDS) R Interface |

gearman | R interface to the Gearman Job Server |

gee | Generalized Estimation Equation solver |

geeM | Fit Generalized Estimating Equations |

geepack | Generalized Estimating Equation Package |

geigen | Calculate generalized eigenvalues of a matrix pair |

geiger | Analysis of evolutionary diversification |

gems | Generalized multistate simulation model |

gemtc | GeMTC network meta-analysis |

gemtc.jar | GeMTC Java binary |

GenABEL | genome-wide SNP association analysis |

genalg | R Based Genetic Algorithm |

gene2pathway | Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures |

GENEAread | Package For Reading Binary files |

geneARMA | Simulate, model, and display data from a time-course microarray experiment with periodic gene expression |

Geneclust | Simulation and analysis of spatial structure of population genetics data |

GeneCycle | Identification of Periodically Expressed Genes |

GeneF | Package for Generalized F-statistics |

genefu | Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer. |

Geneland | Detection of structure from multilocus genetic data. |

geneListPie | Profiling a gene list into GOslim or KEGG function pie |

GeneNet | Modeling and Inferring Gene Networks |

GeneNT | Relevance or Dependency network and signaling pathway discovery |

genepi | Genetic Epidemiology Design and Inference |

GeneralizedHyperbolic | The Generalized Hyperbolic Distribution |

GeneReg | Construct time delay gene regulatory network |

geneSignatureFinder | A Gene-signatures finder tools |

genetics | Population Genetics |

GeneticTools | Collection of Genetic Data Analysis Tools. |

GeneTS | Microarray Time Series and Network Analysis |

GenKern | Functions for generating and manipulating binned kernel density estimates |

genlasso | Path algorithm for generalized lasso problems |

genMOSS | Functions for the Bayesian analysis of GWAS data |

genMOSSplus | |

genomatic | Manages microsatellite projects. Creates 96-well maps, genotyping submission forms, rerun management, and import into statistical software. |

genomicper | Circular Genomic Permutation using GWAS p-values of association |

genoPlotR | Plot publication-grade gene and genome maps |

GenOrd | Simulation of ordinal and discrete variables with given correlation matrix and marginal distributions |

genridge | Generalized ridge trace plots for ridge regression |

GenSA | R functions for Generalized Simulated Annealing |

gensemble | generalized ensemble methods |

genSurv | Generating multi-state survival data |

geofd | Spatial prediction for function value data |

GeoLight | Analysis of light based geolocator data |

GEOmap | Topographic and Geologic Mapping |

geomapdata | Data for topographic and Geologic Mapping |

geometry | Mesh generation and surface tesselation |

geomorph | Geometric morphometric analyses of 2d/3d landmark data |

geonames | Interface to www.geonames.org web service |

geophys | Geophysics, Continuum Mechanics, Mogi Model |

geoPlot | Geocodes street or ip addresses and plots them on a map. |

geoR | Analysis of geostatistical data |

geoRglm | geoRglm - a package for generalised linear spatial models |

georob | Robust Geostatistical Analysis of Spatial Data |

geoscale | Geological timescale plot |

geospacom | Helper package to facilitate the generation of distance matrices used in the package spacom. |

geosphere | Spherical Trigonometry |

geospt | Spatial geostatistics; some geostatistical and radial basis functions, prediction and cross validation; design of optimal spatial sampling networks based on geostatistical modelling |

geostatsp | Geostatistics using SpatialPoints and rasters |

geotools | |

geotopbricks | geotopbricks |

GeoXp | Interactive exploratory spatial data analysis |

geozoo | Zoo of Geometric Objects |

GESTr | Gene Expression State Transformation |

GetNenshuJP | |

getopt | C-like getopt behavior. |

GetR | GetR: Calculate Guttman error trees in R |

GEVcdn | GEV conditional density estimation network |

GExMap | A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data. |

GFMaps | Visualization technique for interpretation of high-throughput genetic or proteomic experiments. |

GGally | Extension to ggplot2. |

ggcolpairs | Combination of GGplot2 plots into a matrix based on data columns. |

ggdendro | Tools for extracting dendrogram and tree diagram plot data for use with ggplot. |

GGEBiplotGUI | GGEBiplotGUI: Interactive GGE Biplots in R |

GGIR | GGIR |

gglasso | Group Lasso Penalized Learning Using A Unified BMD Algorithm |

ggm | A package for Graphical Markov Models |

ggmap | A package for spatial visualization with Google Maps and OpenStreetMap |

ggmcmc | Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference. |

GGMselect | Gaussian Graphs Models selection |

ggparallel | Variations of Parallel Coordinate Plots for Categorical Data |

ggplot | An implementation of the Grammar of Graphics in R |

ggplot2 | An implementation of the Grammar of Graphics |

ggROC | package for roc curve plot with ggplot2 |

ggsubplot | Explore complex data by embedding subplots within plots. |

ggthemes | Extra themes, scales and geoms for ggplot |

GhcnDaily | Downloads and processes GHCN daily |

ghyp | A package on the generalized hyperbolic distribution and its special cases |

gibbs.met | Naive Gibbs Sampling with Metropolis Steps |

GibbsACOV | Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models |

GIGrvg | Random variate generator for the GIG distribution |

GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |

gIPFrm | Generalized Iterative Proportional Fitting for Relational Models |

giRaph | The giRaph package for graph representation in R |

GISTools | Some further GIS capabilities for R |

gitter | Robust and accurate quantification of pinned colony sizes in microorganisms |

Giza | Constructing panels of population pyramid plots based on lattice |

glasso | Graphical lasso- estimation of Gaussian graphical models |

glassomix | High dimensional Mixture Graph Models selection |

gld | Estimation and use of the generalised (Tukey) lambda distribution |

GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods |

gldist | An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution. |

glinternet | |

gllm | Generalised log-linear model |

glm2 | Fitting Generalized Linear Models |

glmc | Fitting Generalized Linear Models Subject to Constraints |

glmdm | R Code for Simulation of GLMDM |

glmlep | Fit GLM with LEP-based penalized maximum likelihood |

glmmAK | Generalized Linear Mixed Models |

GLMMarp | Generalized Linear Multilevel Model with AR(p) Errors Package |

glmmBUGS | Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS |

glmmGS | Gauss-Seidel Generalized Linear Mixed Model solver |

glmmLasso | Variable selection for generalized linear mixed models by L1-penalized estimation |

glmmML | Generalized linear models with clustering |

glmnet | Lasso and elastic-net regularized generalized linear models |

glmnetcr | Fit a penalized constrained continuation ratio model for predicting an ordinal response |

glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |

glmpathcr | Fit a penalized continuation ratio model for predicting an ordinal response. |

glmperm | Inference in Generalized Linear Models |

glmulti | Model selection and multimodel inference made easy |

globalboosttest | Testing the additional predictive value of high-dimensional data |

GlobalDeviance | |

globalGSA | |

globalOptTests | |

glogis | Fitting and Testing Generalized Logistic Distributions |

glpk | GNU Linear Programming Kit |

glpkAPI | R Interface to C API of GLPK |

glrt | Generalized Logrank Tests for Interval-censored Failure Time Data |

gmaps | Wrapper and auxilliary functions for maps package to work with grid graphics system. |

gMCP | Graph Based Multiple Comparison Procedures |

GMD | Generalized Minimum Distance of distributions |

gmm | Generalized Method of Moments and Generalized Empirical Likelihood |

GMMBoost | Likelihood-based Boosting for Generalized mixed models |

gmodels | Various R programming tools for model fitting |

gmp | Multiple Precision Arithmetic |

gmt | Interface between GMT Map-Making Software and R |

gmvalid | Validation of graphical models |

gMWT | Generalized Mann-Whitney Type Tests |

gnm | Generalized Nonlinear Models |

gnmf | Generalized Non-negative Matrix Factorization |

gnomeGUI | GNOME Console for R |

gnumeric | Read data from files readable by gnumeric |

goalprog | Weighted and lexicographical goal programming and optimization |

gof | Model-diagnostics based on cumulative residuals |

GoFKernel | GoFKernel: Testing Goodness-of-fit with the Kernel Density Estimator |

GOFSN | Goodness-of-fit tests for the family of skew-normal models |

GOGANPA | GO-Functional-Network-based Gene-Set-Analysis |

gogarch | Generalized Orthogonal GARCH (GO-GARCH) models |

googlebigquery | R client library for communicating with the Google Bigquery service |

googlePublicData | An R library to build Google's Public Data Explorer DSPL Metadata files |

googleVis | Interface between R and the Google Chart Tools |

gooJSON | Google JSON Data Interpreter for R |

goric | Generalized Order-Restricted Information Criterion |

GOSim | Computation of functional similarities between GO terms and gene products; GO enrichment analysis |

GOsummaries | Word cloud summaries of GO enrichment analysis |

govdat | |

govStatJPN | functions to get public survey data in Japan |

gpairs | gpairs: The Generalized Pairs Plot |

GPArotation | GPA Factor Rotation |

gPCA | Batch Effect Detection via Guided Principal Components Analysis |

gpclib | General Polygon Clipping Library for R |

GPCSIV | |

gPdtest | Bootstrap goodness-of-fit test for the generalized Pareto distribution |

GPfit | Gaussian Process Modeling |

gpk | 100 Data Sets for Statistics Education |

gplm | Generalized partial linear models (GPLM) |

gplots | Various R programming tools for plotting data |

gpls | Classification using generalized partial least squares |

gpmap | |

gppois | Gaussian Processes for Poisson-noised Data |

gpr | |

gProfileR | R interface to the g:Profiler toolkit |

GPseq | gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments |

gptk | Gaussian Processes Tool-Kit |

gputools | A few GPU enabled functions |

GPvam | |

grade | Provides functions for matching student-answers to teacher answers for a variety of data types. |

GRaF | Species distribution modelling using latent Gaussian random fields |

gRain | Graphical Independence Networks |

granova | Graphical Analysis of Variance |

granovaGG | Graphical Analysis of Variance Using ggplot2 |

graph | graph: A package to handle graph data structures |

graphComp | Visual graph comparison |

gRapHD | Efficient selection of undirected graphical models for high-dimensional datasets |

GrapheR | A multi-platform GUI for drawing customizable graphs in R |

graphicsQC | Quality Control for Graphics in R |

graphite | GRAPH Interaction from pathway Topological Environment |

grasp | Generalized Regression Analysis and Spatial Prediction for R |

GRASS | Interface between GRASS 5.0 geographical information system and R |

GrassmannOptim | Grassmann Manifold Optimization |

gRbase | A package for graphical modelling in R |

gRc | Inference in Graphical Gaussian Models with Edge and Vertex Symmetries |

gRcox | Inference in Graphical Gaussian Models with Edge and Vertex Symmetries |

gregmisc | Greg's Miscellaneous Functions |

Grid2Polygons | Convert Spatial Grids to Polygons |

gridBase | Integration of base and grid graphics |

gridDebug | |

gridExtra | functions in Grid graphics |

gridGraphviz | |

GridR | Executes functions on remote hosts, clusters or grids. |

gridSVG | Export grid graphics as SVG |

GriegSmith | Uses Grieg-Smith method on 2 dimentional spatial data |

gRim | Graphical Interaction Models |

grImport | Importing Vector Graphics |

grnn | General regression neural network |

grnnR | A Generalized Regression Neural Network |

grofit | The package was developed to fit fit many growth curves obtained under different conditions. |

grouped | Regression Analysis of Grouped and Coarse Data |

GroupSeq | Performing computations related to group sequential designs. |

growcurves | Bayesian semi and nonparametric growth curve models that additionally include multiple membership random effects. |

growth | |

growthmodels | |

growthrate | Bayesian reconstruction of growth velocity |

grplasso | Fitting user specified models with Group Lasso penalty |

grpreg | Regularization paths for regression models with grouped covariates |

GRRGI | Gauge R and R Confidence Intervals |

grt | General Recognition Theory |

GRTo | Tools for the analysis of Gutenberg-Richter distributions of earthquake magnitudes |

GSA | Gene set analysis |

gsalib | Utility functions for GATK |

gsarima | Two functions for Generalized SARIMA time series simulation |

gsbDesign | Group Sequential Bayes Design |

gsc | Generalised Shape Constraints |

gsDesign | Group Sequential Design |

GSE | Robust Estimation of Multivariate Location and Scatter in the Presence of Missing Data |

gsg | Calculation of selection coefficients |

GSIF | Global Soil Information Facilities |

gsl | wrapper for the Gnu Scientific Library |

GSM | Gamma Shape Mixture |

gsmaRt | Gene Set Microarray Testing |

gsmoothr | Smoothing tools |

gss | General Smoothing Splines |

gstat | spatial and spatio-temporal geostatistical modelling, prediction and simulation |

gstudio | Spatial utility functions from the Dyer laboratory |

gsubfn | Utilities for strings and function arguments. |

gtable | Arrange grobs in tables. |

gtcorr | Calculate efficiencies of group testing algorithms with correlated responses |

gte | Generalized Turnbull's estimator |

gtkDevice | Loadable and embeddable gtk device driver for R |

gtm | Generative topographic mapping |

gtools | Various R programming tools |

gtx | Genetics ToolboX |

GuardianR | Guardian API Wrapper |

Guerry | Maps, data and methods related to Guerry (1833) "Moral Statistics of France" |

GUIDE | GUI for DErivatives in R |

gumbel | Gumbel copula |

GUniFrac | Generalized UniFrac distances |

GUTS | GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model |

gvcm.cat | Regularized Categorial Effects/Categorial Effect Modifiers/Continuous/Smooth effects in GLMs |

gvlma | Global Validation of Linear Models Assumptions |

GWAF | Genome-wide association/interaction analysis and rare variant analysis with family data |

GWASExactHW | Exact Hardy-Weinburg testing for Genome Wide Association Studies |

GWAtoolbox | GWAS Quality Control |

gwerAM | Controlling the genome-wide type I error rate in association mapping experiments |

GWG | Calculation of probabilities for inadequate and excessive gestational weight gain |

gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |

gWidgets2 | |

gWidgetsRGtk2 | Toolkit implementation of gWidgets for RGtk2 |

gWidgetsrJava | Toolkit implementation of gWidgets for rJava |

gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |

gWidgetsWWW | Toolkit implementation of the gWidgets API for use with web pages |

GWmodel | Geographically weighted models |

GWRM | GWRM |

gwrr | Fits geographically weighted regression models with diagnostic tools |

GxM | |

h5r | Interface to HDF5 Files |

haarfisz | Software to perform Haar Fisz transforms |

HAC | Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC) |

hacks | Convenient R Functions |

HadoopStreaming | Utilities for using R scripts in Hadoop streaming |

halp | Show certain type of comments from function bodies as "live-help" |

HandTill2001 | Multiple Class Area under ROC Curve |

HAP.ROR | Recursive Organizer (ROR) |

hapassoc | Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm |

HapEstXXR | Multi-locus stepwise regression (MSR) |

HAPim | HapIM |

Haplin | Analyzing case-parent triad and/or case-control data with SNP haplotypes |

haplo.ccs | Estimate Haplotype Relative Risks in Case-Control Data |

haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |

HaploSim | HaploSim |

hapsim | Haplotype Data Simulation |

HardyWeinberg | Graphical tests for Hardy-Weinberg equilibrium |

harvestr | A Parallel Simulation Framework |

hash | Full feature implementation of hash/associated arrays/dictionaries |

hashFunction | A collection of non-cryptographic hash functions |

hbim | Hill/Bliss Independence Model for Combination Vaccines |

hbmem | Hierarchical Bayesian Analysis of Recognition Memory |

hbsae | Hierarchical Bayesian Small Area Estimation |

hcc | Hidden correlation check |

hda | Heteroscedastic Discriminant Analysis |

HDclassif | High Dimensional Supervised Classification and Clustering |

hddplot | Use known groups in high-dimensional data to derive scores for plots |

hdeco | Hierarchical DECOmposition of Entropy for Categorical Map Comparisons |

hdf5 | HDF5 |

hdlm | Fitting High Dimensional Linear Models |

HDMD | Statistical Analysis Tools for High Dimension Molecular Data (HDMD) |

hdrcde | Highest density regions and conditional density estimation |

HDtweedie | |

HEAT | Health Effects of Air Pollution and Temperature (HEAT) |

heatex | Heat exchange calculations during physical activity. |

heatmap.plus | Heatmap with more sensible behavior. |

heatmapFit | Heatmap Fit Statistic For Binary Dependent Variable Models |

heavy | Package for outliers accommodation using heavy-tailed distributions |

helloJavaWorld | Hello Java World |

helpr | Help for R. |

heplots | Visualizing Hypothesis Tests in Multivariate Linear Models |

hergm | Hierarchical Exponential-Family Random Graph Models with Local Dependence |

het.test | White's Test for Heteroskedasticity |

hett | Heteroscedastic t-regression |

hexbin | Hexagonal Binning Routines |

hexView | Viewing Binary Files |

HFWutils | csv import, csv export, garbage collection,string matching and passing by reference |

hgam | High-dimensional Additive Modelling |

hglm | Hierarchical Generalized Linear Models |

HGLMMM | Hierarchical Generalized Linear Models |

HGNChelper | Handy functions for working with HGNC gene symbols and Affymetrix probeset identifiers. |

HH | Statistical Analysis and Data Display: Heiberger and Holland |

HHG | Heller-Heller-Gorfine Tests of Independence |

hht | The Hilbert-Huang Transform: Tools and Methods |

HI | Simulation from distributions supported by nested hyperplanes |

HIBAG | HIBAG -- HLA Genotype Imputation with Attribute Bagging |

HiddenMarkov | Hidden Markov Models |

HiDimDA | High Dimensional Discriminant Analysis |

hier.part | Hierarchical Partitioning |

hierarchicalDS | Functions for performing hierarchical analysis of distance sampling data |

hierfstat | Estimation and tests of hierarchical F-statistics |

hierNet | A Lasso for Hierarchical Interactions |

HIest | Hybrid index estimation |

highfrequency | highfrequency |

highlight | Syntax highlighter |

HighProbability | HighProbability estimates which alternative hypotheses have frequentist or Bayesian probabilities at least as great as a specified threshold, given a list of p-values. |

highr | Syntax highlighting for R |

highriskzone | Determining and evaluating high-risk zones |

hint | Tools for hypothesis testing based on Hypergeometric Intersection distributions |

hints | Provide hints on what to do next |

HiPLARM | High Performance Linear Algebra in R |

hiPOD | hierarchical Pooled Optimal Design |

hisemi | Hierarchical Semiparametric Regression of Test Statistics |

HistData | Data sets from the history of statistics and data visualization |

histogram | Construction of regular and irregular histograms with different options for automatic choice of bins |

HistogramTools | |

hitandrun | "Hit and Run" method for sampling uniformly from convex shapes. |

hive | Hadoop InteractiVE |

HiveR | 2D and 3D Hive Plots for R |

HLMdiag | Diagnostic tools for hierarchical (multilevel) linear models |

hlr | Hidden Logistic Regression |

hmeasure | The H-measure and other scalar classification performance metrics |

Hmisc | Harrell Miscellaneous |

HMM | HMM - Hidden Markov Models |

hmm.discnp | Hidden Markov models with discrete non-parametric observation distributions. |

hmmm | hierarchical multinomial marginal models |

HMMmix | The HMMmixture package |

HMP | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |

HMPTrees | Statistical Object Oriented Data Analysis of RDP-based Taxonomic trees from Human Microbiome Data: Modeling, Visualization, and Two-Group Comparison |

HMR | Flux estimation with static chamber data |

hoa | |

hof | More higher order functions for R. |

holdem | Texas Holdem simulator |

Holidays | Holiday and halfday data, for use with the TimeWarp package |

homals | Gifi Methods for Optimal Scaling |

homeR | Functions useful for building physics |

homtest | Homogeneity tests for Regional Frequency Analysis |

hopach | Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) |

hot | Computation on micro-arrays |

HotDeckImputation | |

Hotelling | Hotelling's T-squared test and variants |

hotspots | Hot spots |

howmany | A lower bound for the number of correct rejections |

HPbayes | Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling |

HPO.db | A set of annotation maps describing the Human Phenotype Ontology |

HPOSim | Analysis similarities between HPO terms and phenotypic similarity between genes and between diseases. |

HSAUR | A Handbook of Statistical Analyses Using R |

HSAUR2 | A Handbook of Statistical Analyses Using R (2nd Edition) |

hSDM | hierarchical Bayesian species distribution models |

hsicCCA | Canonical Correlation Analysis based on Kernel Independence Measures |

hsmm | Hidden Semi Markov Models |

HSROC | Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test |

HTMLapplets | Dynamic visualisation in HTML documents |

HTMLUtils | Facilitates automated HTML report creation |

hts | Hierarchical and grouped time series |

HTSCluster | Clustering high throughput sequencing (HTS) data |

HTSDiff | |

httpRequest | Basic HTTP Request |

httpuv | HTTP and WebSocket server library |

httr | Tools for working with URLs and HTTP |

huge | High-dimensional Undirected Graph Estimation |

HumMeth27QCReport | HumMeth27QCReport: quality control and preprocessing of Illumina's Infinium methylation assays. |

HW.pval | Testing Hardy-Weinberg Equilibrium for Multiallelic Genes |

hwde | Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci. |

HWEBayes | Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing. |

HWEintrinsic | Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem |

hwriter | HTML Writer - Outputs R objects in HTML format |

hwriterPlus | hwriterPlus: Extending the hwriter Package |

hybridHclust | Hybrid hierarchical clustering |

HybridMC | Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques |

hydroApps | |

hydrogeo | Groundwater data presentation and interpretation. |

hydroGOF | Goodness-of-fit functions for comparison of simulated and observed hydrological time series |

HydroMe | R codes for estimating water retention and infiltration model parameters using experimental data |

hydroPSO | Particle Swarm Optimisation, with focus on Environmental Models |

hydrosanity | Graphical user interface for exploring hydrological time series |

hydroTSM | Time series management, analysis and interpolation for hydrological modelling |

HyperbolicDist | The hyperbolic distribution |

hyperdirichlet | A generalization of the Dirichlet distribution |

hypergeo | The hypergeometric function |

hyperSpec | Interface for hyperspectral data, i.e. spectra + meta info (spatial, time, concentration, ...) |

HyPhy | Macroevolutionary phylogentic analysis of species trees and gene trees |

hypothesestest | Confidence Intervals and Tests of Statistical Hypotheses |

hypred | Simulation of genomic data in applied genetics |

hysteresis | |

hzar | Hybrid Zone Analysis using R |

IASD | Model selection for index of asymmetry distribution |

IAT | |

ibd | INCOMPLETE BLOCK DESIGNS |

IBDhaploRtools | Functions for the Analysis of IBD Haplo output |

ibdreg | Regression Methods for IBD Linkage With Covariates |

IBDsim | Simulation of chromosomal regions shared by family members. |

IBHM | Approximation using the IBHM method |

Iboot | Iboot: iterated bootstrap tests and confidence sets. |

ibr | Iterative Bias Reduction |

IBrokers | R API to Interactive Brokers Trader Workstation |

iBUGS | An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets |

ic.infer | Inequality constrained inference in linear normal situations |

IC2 | Inequality and Concentration Indices and Curves |

ic50 | Standardized high-throughput evaluation of cell-based compound screens |

icaOcularCorrection | Independent Components Analysis (ICA) based artifact correction. |

ICC | Functions facilitating the estimation of the Intraclass Correlation Coefficient |

ICE | Iterated Conditional Expectation |

ICEbox | |

ICEinfer | Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples |

Icens | NPMLE for Censored and Truncated Data |

icensmis | Study Design and Data Analysis in the presence of error-prone diagnostic tests and self-reported outcomes |

iCluster | Integrative clustering of multiple genomic data types |

iCluster | |

icomp | ICOMP criterion |

ICS | Tools for Exploring Multivariate Data via ICS/ICA |

ICSNP | Tools for Multivariate Nonparametrics |

idbg | |

iDEMO | integrated degradation models |

identity | Jacquard Condensed Coefficients of Identity |

IDPmisc | Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch) |

idr | Irreproducible discovery rate |

ieeeround | Functions to set and get the IEEE rounding mode |

ifa | Independent Factor Analysis |

iFad | An integrative factor analysis model for drug-pathway association inference |

IFP | Identifying functional polymorphisms in genetic association studies |

ifs | Iterated Function Systems |

ifultools | Insightful Research Tools |

ig | Package for a General Class of Inverse Gaussian Distributions |

iGasso | Genetic association tests and utilities |

iGenomicViewer | Tool for sending interactive bioinformatic heatmaps with tool-tip content. |

IgorR | |

igraph | Network analysis and visualization |

igraph0 | Network analysis and visualization, old, deprecated package. |

igraphdata | A collection of network data sets for the igraph package |

igraphtosonia | Convert iGraph graps to SoNIA .son files |

iid.test | iid-test |

IM | Orthogonal Moment Analysis |

ImageMetrics | Facilitates image analysis for social scientists. |

Imap | Interactive Mapping |

imguR | Share plots using the imgur.com image hosting service |

IMIS | Increamental Mixture Importance Sampling |

ImpactIV | Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method |

imprProbEst | Minimum distance estimation in an imprecise probability model |

imputation | imputation |

impute | impute: Imputation for microarray data |

imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data |

imputeYn | Imputing the last largest censored observation/observations under weighted least squares |

inarmix | Mixture models for longitudinal count data. |

incReg | |

IndependenceTests | Nonparametric tests of independence between random vectors. |

indicspecies | Studying the statistical relationship between species and groups of sites |

ineq | Measuring Inequality, Concentration, and Poverty |

inetwork | Network Analysis and Plotting |

InfDim | Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories. |

inference | Functions to extract inferential values of a fitted model object |

InferenceSMR | Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival. |

inflection | Finds the inflection point of a curve |

influence.ME | Tools for detecting influential data in mixed effects models |

influence.SEM | |

infochimps | An R wrapper for the infochimps.com API services |

infoDecompuTE | Information Decomposition of Two-phase Experiments |

informR | R Tools for Creating Sequence Statistics |

infotheo | Information-Theoretic Measures |

infutil | Information Utility |

IniStatR | |

INLABMA | |

inline | Inline C, C++, Fortran function calls from R |

inlinedocs | Convert inline comments to documentation |

InPosition | Inference Tests for ExPosition |

insideRODE | insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes. |

insideRODE | |

insol | Solar Radiation |

installr | Functions for updating and installing a new version of R and other software - from R |

int64 | 64 bit integer types |

intamap | procedures for automated interpolation |

intamapInteractive | procedures for automated interpolation - methods only to be used interactively, not included in intamap package |

intcox | Iterated Convex Minorant Algorithm for interval censored event data |

integrativeME | integrative mixture of experts |

integrativeMEdata | Matched Clinical factors and microarray data (part of integrativeME package) |

integrOmics | end of integrOmics package |

Interact | Tests for marginal interactions in a 2 class response model |

InteractiveIGraph | interactive network analysis and visualization. |

interactivity | toggle R interactive mode. |

intergraph | Coercion routines for network data objects in R |

Interpol | Interpolation of amino acid sequences |

Interpol.T | |

InterVA4 | |

interval | Weighted Logrank Tests and NPMLE for interval censored data |

intervals | Tools for working with points and intervals |

IntLik | |

intpoint | linear programming solver by the interior point method and graphically (two dimensions) |

intReg | |

intRegGOF | Integrated Regression Goodness of Fit |

introgress | methods for analyzing introgression between divergent lineages |

intsvy | International Assessment Data Manager |

investr | Calibration/Inverse Estimation with Linear and Nonlinear Regression Models in R. |

ipdmeta | Tools for subgroup analyses with multiple trial data using aggregate statistics |

ipfp | Fast implementation of the iterative proportional fitting procedure in C |

iplots | iPlots - interactive graphics for R |

IPMpack | Builds and analyses Integral Projection Models (IPMs). |

ipptoolbox | IPP Toolbox |

ipred | Improved Predictors |

IPSUR | Introduction to Probability and Statistics Using R |

ipw | Estimate inverse probability weights. |

IQCC | Improved Quality Control Charts |

iqLearn | |

IQMNMR | Identification and Quantification of Metabolites by Using 1D 1H NMR FID |

irace | |

iRefR | iRefIndex Manager |

iRegression | Regression methods for interval-valued variables |

irlba | Fast partial SVD by implicitly-restarted Lanczos bidiagonalization |

irr | Various Coefficients of Interrater Reliability and Agreement |

irtoys | Simple interface to the estimation and plotting of IRT models |

irtProb | Utilities and Probability Distributions Related to Multidimensional Person Item Response Models (IRT) |

irtrees | Estimation of Tree-Based Item Response Models |

ISA | INTRODUZIONE ALLA STATISTICA APPLICATA con esempi in R |

isa2 | The Iterative Signature Algorithm |

ISBF | Iterative Selection of Blocks of Features - ISBF |

ISDA.R | interval symbolic data analysis for R |

isdals | Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences |

ISIPTA | ISIPTA network analysis |

ISLR | Data for An Introduction to Statistical Learning with Applications in R |

ismev | An Introduction to Statistical Modeling of Extreme Values |

Iso | Functions to perform isotonic regression. |

isocir | Isotonic Inference for Circular data |

ISOcodes | Selected ISO codes |

IsoGene | Testing for monotonic relationship between gene expression and doses in a microarray experiment. |

isopam | Isopam (Clustering) |

isopat | Calculation of isotopic pattern for a given molecular formula |

isotone | Active set and generalized PAVA for isotone optimization |

IsotopeR | Stable isotope analysis |

ISOweek | Week of the year and weekday according to ISO 8601 |

iSubpathwayMiner | The package can implement the graph-based reconstruction and analyses of the KEGG pathways. |

isva | Independent Surrogate Variable Analysis |

ISwR | Introductory Statistics with R |

iteRates | Parametric rate comparison |

iterators | Iterator construct for R |

iterLap | Approximate probability densities by iterated Laplace Approximations |

itertools | Iterator Tools |

itree | Tools for classification and regression trees, with an emphasis on interpretability. |

its | Irregular Time Series |

itsmr | Time series analysis package for students |

IUPS | Incorporating Uncertainties in Propensity Scores |

iv | Information Visualisation with UML and Graphs |

ivbma | Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors |

ivivc | A data analysis tool for in vitro-in vivo correlation (IVIVC) |

iWebPlots | Interactive web-based plots |

iWeigReg | Improved methods for causal inference and missing data problems |

iwtp | Numerical evaluation willingness to pay based on interval data |

jaatha | A Fast Parameter Estimation Method for Evolutionary Biology |

jackknifeKME | Jackknife estimates of Kaplan-Meier estimators or integrals. |

JADE | JADE and other BSS methods as well as some BSS performance criteria |

JASPAR | R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices. |

JavaGD | Java Graphics Device |

JGL | Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes |

JGR | JGR - Java GUI for R |

jit | Just-in-time compiler for the R language |

JJcorr | Calculates polychorical correlations for several copula families. |

JLLprod | Nonparametric Estimation of Homothetic and Generalized Homothetic Production Functions |

JM | Joint Modeling of Longitudinal and Survival Data |

JMbayes | Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach |

jmec | Fit joint model for event and censoring with cluster-level frailties |

Jmisc | Julian Miscellaneous Function |

JMLSD | Joint Modeling of Longitudinal and Survival Data - Power Calculation |

Johnson | Johnson Transformation |

JohnsonDistribution | Johnson Distribution |

joineR | Joint modelling of repeated measurements and time-to-event data |

jointDiag | Joint Approximate Diagonalization of a set of square matrices |

JointGLM | Joint Modelling of Mean and Dispersion (outdated, see package JointModeling) |

JointModeling | Joint Modelling of Mean and Dispersion |

JointRegBC | Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach |

JOP | Joint Optimization Plot |

JoSAE | Functions for unit-level small area estimators and their variances |

jpeg | Read and write JPEG images |

JPSurv | Methods for population-based cancer survival analysis |

jtrans | Johnson transformation for normality. |

JudgeIt | JudgeIt: A Program for Evaluating Electoral Systems and Redistricting Plans |

Julia | Fractal Image Data Generator |

jvmr | Integration of R, Java, and Scala |

KappaGUI | GUI for Cohen's and Fleiss' Kappa |

kappalab | Non-additive measure and integral manipulation functions |

kappaSize | Sample Size Estimation Functions for Studies of Interobserver Agreement |

KappaV | Calculates "vectorial Kappa", an index of congruence between patchy mosaics. |

kaps | K Adaptive Partitioning for Survival data |

kBestShortestPaths | kbest: Finds K best paths in a given graph. |

kcirt | |

kdetrees | Nonparametric method for identifying discordant trees |

kedd | |

kelvin | Calculate solutions to the Kelvin differential equation using Bessel functions. |

Kendall | Kendall rank correlation and Mann-Kendall trend test |

kequate | The kernel method of test equating |

kerdiest | Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions. |

kerfdr | semi-parametric kernel-based approach to local fdr estimations |

kernelFactory | Kernel Factory: An ensemble of kernel Machines |

kernelPop | Spatially explicit population genetic simulations |

kernlab | Kernel-based Machine Learning Lab |

KernSmooth | Functions for kernel smoothing for Wand & Jones (1995) |

KernSmoothIRT | Nonparametric Item Response Theory |

KFAS | Kalman Filter and Smoother for Exponential Family State Space Models. |

kin.cohort | Analysis of kin-cohort studies |

kinfit | Routines for fitting kinetic models to chemical degradation data |

kinship | mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees |

kinship2 | Pedigree functions |

kitagawa | Spectral response of water wells to harmonic strain and pressure |

kknn | Weighted k-Nearest Neighbors |

klaR | Classification and visualization |

klausuR | Multiple Choice Test Evaluation |

klin | Linear equations with Kronecker structure |

km.ci | Confidence intervals for the Kaplan-Meier estimator |

kmi | Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting |

Kmisc | Miscellaneous functions intended to improve the R coding experience |

kml | K-means for Longitudinal data |

kml3d | K-means for joint Longitudinal data |

kmlcov | |

KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |

knitcitations | Citations for knitr markdown files |

knitr | |

knitrBootstrap | Knitr Bootstrap framework. |

knn | knn-gcv |

knncat | Nearest-neighbor classification with categorical variables |

knnFinder | Fast Near Neighbour Search |

knnflex | A more flexible KNN |

knnGarden | Multi-distance based k-Nearest Neighbors |

knnTree | k-nn classification with variable selection inside leaves of a tree |

knorm | Microarray Data From Multiple Biologically Interrelated Experiments |

kobe | Tools for providing advice for the Tuna Regional Fisheries Management Organisations |

kohonen | Supervised and unsupervised self-organising maps |

kolmim | An improved evaluation of Kolmogorov's distribution |

KoNLP | Korean NLP Package |

koRpus | An R Package for Text Analysis |

Kpart | Spline Fitting |

kriging | Ordinary Kriging |

KrigInv | Kriging-based Inversion for Deterministic and Noisy Computer Experiments |

KRLS | Kernel-based Regularized Least Squares (KRLS) |

ks | Kernel smoothing |

kSamples | K-Sample Rank Tests and their Combinations |

KsPlot | Check the power of seveal statistical models. |

kst | Knowledge Space Theory |

ktsolve | |

ktspair | k-Top Scoring Pairs for Microarray Classification |

kulife | Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen |

kza | Kolmogorov-Zurbenko Adaptive Filters |

kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |

kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |

l2boost | l2boost - Friedman's boosting algorithm for regularized linear regression |

labdsv | Ordination and Multivariate Analysis for Ecology |

label.switching | |

labeledLoop | Labeled Loop |

labeling | Axis Labeling |

labeltodendro | Convert labels or tables to a dendrogram |

labstatR | Libreria del Laboratorio di Statistica con R |

laeken | Estimation of indicators on social exclusion and poverty |

laercio | Duncan test, Tukey test and Scott-Knott test. |

LaF | Fast access to large ASCII files |

lago | An efficient kernel algorithm for rare target detection and unbalanced classification |

laGP | |

Lahman | Sean Lahman's Baseball Database |

lambda.r | Functional programming in R |

Lambda4 | Collection of Internal Consistency Reliability Coefficients. |

LambertW | Analyze and Gaussianize skewed, heavy-tailed data |

lancet.iraqmortality | Surveys of Iraq Mortality Published in The Lancet |

landsat | Radiometric and topographic correction of satellite imagery |

languageR | Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics". |

LaplacesDemon | Complete Environment for Bayesian Inference |

LARF | LARF: Local Average Response Functions for Estimating Treatment Effects |

LargeRegression | Large Regressions |

lars | Least Angle Regression, Lasso and Forward Stagewise |

laser | Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |

lasso2 | L1 constrained estimation aka `lasso' |

lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |

last.call | Utility for returning previous commands as unevaluated calls and the full context of function calls. |

latdiag | Draws diagrams useful for checking latent scales |

latentnet | Latent position and cluster models for statistical networks |

latentnetHRT | Latent position and cluster models for statistical networks |

Laterality | Functions to calculate common laterality statistics in primatology. |

lattice | Lattice Graphics |

latticeDensity | Density estimation and nonparametric regression on irregular regions |

latticedl | Lattice direct labels |

latticeExtra | Extra Graphical Utilities Based on Lattice |

LatticeKrig | Multiresolution Kriging based on Markov random fields |

latticist | A graphical user interface for exploratory visualisation |

lava | Linear Latent Variable Models |

lava.tobit | LVM with censored and binary outcomes |

lavaan | Latent Variable Analysis |

lavaan.survey | Complex survey structural equation modeling (SEM) |

lawstat | An R package for biostatistics, public policy, and law |

lazy | Lazy Learning for Local Regression |

lazyData | A LazyData Facility |

lazyWeave | LaTeX Wrappers for R Users |

lbiassurv | Length-biased correction to survival curve estimation. |

LCA | |

LCAextend | Latent Class Analysis (LCA) with familial dependence in extended pedigrees |

lcd | Learn Chain graphs via Decomposition |

lcda | Latent Class Discriminant Analysis |

LCFdata | Data sets for package ``LMERConvenienceFunctions'' |

lcmm | Estimation of latent class mixed models, joint latent class mixed models and mixed models for curvilinear outcomes |

lcmr | lcmr package |

lda | Collapsed Gibbs sampling methods for topic models. |

lda.cv | Cross-validation for linear discriminate analysis |

ldbounds | Lan-DeMets Method for Group Sequential Boundaries |

LDcorSV | Linkage disequilibrium corrected by the structure and the relatedness |

ldDesign | Design of experiments for detection of linkage disequilibrium |

LDdiag | Link Function and Distribution Diagnostic Test for Social Science Researchers |

LDExplorer | Efficient Whole-Genome LD Based Haplotpe Block Recognition |

LDheatmap | Graphical display of pairwise linkage disequilibria between SNPs |

ldlasso | LD LASSO Regression for SNP Association Study |

LDOD | Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models. |

ldr | Methods for likelihood-based dimension reduction in regression |

LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |

LeafAngle | Fits, plots, and summarizes leaf angle distributions. |

LEAPFrOG | Likelihood Estimation of Admixture in Parents From Offspring Genotypes |

leapp | latent effect adjustment after primary projection |

leaps | regression subset selection |

LearnBayes | Functions for Learning Bayesian Inference |

LearnEDA | Functions for Learning Exploratory Data Analysis |

leiv | Bivariate linear errors-in-variables estimation |

LeLogicielR | Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french) |

lemma | Laplace approximated EM Microarray Analysis |

lessR | Less Code, More Results |

lestat | A package for LEarning STATistics |

lfe | Linear Group Fixed Effects |

lfstat | Calculation of Low Flow Statistics for daily stream flow data |

lga | Tools for linear grouping analysis (LGA) |

lgcp | Log-Gaussian Cox Process |

LGS | simulating Linkage Group Selection (LGS) |

lgtdl | A set of methods for longitudinal data objects. |

lhs | Latin Hypercube Samples |

libamtrack | Computational routines for proton and ion radiotherapy |

LiblineaR | Linear Predictive Models Based On The Liblinear C/C++ Library. |

LICORS | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |

LICurvature | Sensitivity Analysis for Case Weight in Normal Linear Regression |

lifecontingencies | A package to perform actuarial mathematics for life contingencies insurances |

LifeTables | A package to implement HMD model life table system |

LIHNPSD | Poisson Subordinated Distribution |

likelihood | |

likeLTD | |

likert | |

LIM | Linear Inverse Model examples and solution methods. |

limitplot | Jitter/CI Plot with Ordered Points Below the Limit of Detection |

limSolve | Solving Linear Inverse Models |

LinearizedSVR | Linearized Support Vector Regression |

lineup | Lining up two sets of measurements |

linkcomm | Tools for Generating, Visualizing, and Analysing Link Communities in Networks |

linLIR | linear Likelihood-based Imprecise Regression |

linprog | Linear Programming / Optimization |

lint | Tools to check R code style |

liso | Fitting lasso penalised additive isotone models |

lisp | |

lisrelToR | Import output from LISREL into R |

list | Statistical Methods for the Item Count Technique and List Experiment |

LIStest | Longest Increasing Subsequence Independence Test |

ljr | Logistic Joinpoint Regression |

LLAhclust | Hierarchical clustering of variables or objects based on the likelihood linkage analysis method |

llama | Leveraging Learning to Automatically Manage Algorithms |

LLdecomp | Decomposes a set of variables into cliques and separators. |

lle | Locally linear embedding |

LLN | Learning with latent networks |

lm.br | |

lmbc | Linear Model Bias Correction for RNA-Seq Data |

lme4 | Linear mixed-effects models using Eigen and S4 |

lmec | Linear Mixed-Effects Models with Censored Responses |

lmeNB | Fit negative binomial mixed-effect regression model. |

lmeNBBayes | Sample from the posterior of the negative binomial mixed-effect regression model. The random effect is modeled with DP mixture of beta distributions. |

LMERConvenienceFunctions | A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions. |

lmerTest | Tests for random and fixed effects for linear mixed effect models (lmer objects of lme4 package). |

lmeSplines | Add smoothing spline modelling capability to nlme. |

LMest | Fit Latent Markov models in basic versions |

lmf | Functions for estimation and inference of selection in age-structured populations |

LMGene | LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays |

lmm | Linear mixed models |

lmmfit | Goodness-of-fit-measures for linear mixed models with one-level-grouping |

lmmlasso | Linear mixed-effects models with Lasso |

lmodel2 | Model II Regression |

lmom | L-moments |

lmomco | L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions |

Lmoments | L-moments and quantile mixtures |

lmomRFA | Regional frequency analysis using L-moments |

lmPerm | Permutation tests for linear models |

lmSupport | Support for Linear Models |

lmtest | Testing Linear Regression Models |

LN3GV | LN3GV |

lnMLE | Logistic-Normal Model for Clustered Binary (Binomial) Data |

localdepth | Local Depth |

localgauss | Estimating local Gaussian parameters |

locfdr | Computes local false discovery rates |

locfit | Local Regression, Likelihood and Density Estimation. |

locits | |

Lock5Data | Datasets for "Statistics: UnLocking the Power of Data" |

locpol | Kernel local polynomial regression |

lodplot | Plot a genome scan |

log10 | Decimal log plotting in two and three dimensions |

log4r | A simple logging system for R, based on log4j. |

LogConcDEAD | Log-concave Density Estimation in Arbitrary Dimensions |

logconcens | Maximum likelihood estimation of a log-concave density based on censored data |

logcondens | Estimate a Log-Concave Probability Density from iid Observations |

logcondens.mode | Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode. |

logcondiscr | Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations |

logging | R logging package |

LogicForest | Logic Forest |

LogicReg | Logic Regression |

logilasso | Analysis of sparse contingency tables with penalization approaches |

logistf | Firth's bias reduced logistic regression |

logistiX | Exact logistic regression including Firth correction |

LogitNet | Infer network based on binary arrays using regularized logistic regression |

logitnorm | Functions for the logitnormal distribution. |

loglognorm | Double log normal distribution functions |

logmult | Log-multiplicative models, including association models |

LogrankA | Logrank Test for Aggregated Survival Data |

logregperm | Inference in Logistic Regression |

logspline | Logspline density estimation routines |

lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |

lomb | |

longCatEDA | Package for Plotting Categorical Longitudinal and Time-Series Data |

longclust | Model-Based Clustering and Classification for Longitudinal Data |

longitudinal | Analysis of Multiple Time Course Data |

longitudinalData | Longitudinal Data |

longmemo | Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions |

longpower | Sample size calculations for longitudinal data |

longRPart | Recursive partitioning of longitudinal data using mixed-effects models |

loop | loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology |

LoopAnalyst | A collection of tools to conduct Levins' Loop Analysis |

lordif | Logistic Regression Differential Item Functioning using IRT |

lorec | LOw Rand and sparsE Covariance matrix estimation |

lossDev | Robust Loss Development Using MCMC |

LOST | Missing morphometric data simulation and estimation |

LowRankQP | Low Rank Quadratic Programming |

lpc | Lassoed principal components for testing significance of features |

LPCM | Local principal curve methods |

lpint | Local polynomial esitmators of intensity function or its derivatives |

LPmerge | Merging linkage maps by linear programming |

lpridge | Local Polynomial (Ridge) Regression |

lpSolve | Interface to Lp_solve v. 5.5 to solve linear/integer programs |

lpSolveAPI | R Interface for lp_solve version 5.5.2.0 |

lqa | Penalized Likelihood Inference for GLMs |

lqmm | Linear Quantile Mixed Models |

lrmest | |

LS2W | Locally stationary two-dimensional wavelet process estimation scheme |

lsa | Latent Semantic Analysis |

LSC | Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data |

LSD | Lots of Superior Depictions |

lsdv | Fixed effect panel data regression |

lshorth | The Length of the Shorth |

lsmeans | Least-squares means |

LSMonteCarlo | |

lspls | LS-PLS Models |

lsr | Companion package to "Learning Statistics with R" |

lss | the accelerated failure time model to right censored data based on least-squares principle |

ltm | Latent Trait Models under IRT |

ltmle | Longitudinal Targeted Maximum Likelihood Estimation |

LTPDvar | LTPD and AOQL plans for acceptance sampling inspection by variables |

LTR | Perform LTR analysis on microarray data |

ltsa | Linear time series analysis |

ltsbase | Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method |

ltsk | local time space kriging |

lubridate | Make dealing with dates a little easier |

luca | Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |

Luminescence | Package for Luminescence Dating data analysis |

LVMMCOR | A Latent Variable Model for Mixed Continuous and Ordinal Responses |

lvplot | Level value plots for R |

LVQTools | Learning Vector Quantization Tools |

lxb | Fast LXB file reader |

lymphclon | Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates |

M3 | Reading M3 files |

maanova | Tools for analyzing Micro Array experiments |

MAc | Meta-Analysis with Correlations |

MAclinical | Class prediction based on microarray data and clinical parameters |

MAd | Meta-Analysis with Mean Differences |

mada | Meta-Analysis of Diagnostic Accuracy (mada) |

MADAM | This package provides some basic methods for meta-analysis |

madsim | A Flexible Microarray Data Simulation Model |

Maeswrap | Wrapper functions for MAESTRA/MAESPA. |

magic | create and investigate magic squares |

magicaxis | Pretty scientific plotting with minor-tick and log minor-tick support |

magma | Matrix Algebra on GPU and Multicore Architectures |

magnets | Simulate micro-magnets dynamics |

Sending Email Notifications from R | |

MAINT.Data | Model and Analize Interval Data |

makeProject | Creates an empty package framework for the LCFD format |

makeR | |

makesweave | Literate Programming with Make and Sweave |

malaria.em | |

MALDIquant | Quantitative Analysis of Mass Spectrometry Data |

MALDIquantForeign | Import/Export routines for MALDIquant |

mallet | A wrapper around the Java machine learning tool MALLET |

MAMA | Meta-Analysis of MicroArray |

MAMS | Designing Multi-Arm Multi-Stage Studies |

MAMSE | Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights. |

Mangrove | Risk prediction on trees |

Map2NCBI | |

mapdata | Extra Map Databases |

MapGAM | Mapping Smoothed Odds Ratios from Individual-Level Data |

mapLD | Linkage Disequilibrium Mapping |

MAPLES | Smoothed age profile estimation |

mapplots | Data visualisation on maps |

mapproj | Map Projections |

mapReduce | mapReduce - flexible mapReduce algorithm for parallel computation |

maps | Draw Geographical Maps |

maptools | Tools for reading and handling spatial objects |

maptree | Mapping, pruning, and graphing tree models |

mAr | Multivariate AutoRegressive analysis |

MAR1 | Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data |

mar1s | Multiplicative AR(1) with Seasonal Processes |

marelac | Tools for Aquatic Sciences |

marelacTeaching | Datasets and tutorials for use in aquatic sciences |

marg | Approximate marginal inference for regression-scale models |

margie | Log Marginal Likelihood of Gaussian Mixture |

marginalmodelplots | Marginal Mean Model Plots |

marginTree | marginTree: margin trees for high-dimensional classification |

margLikArrogance | Marginal Likelihood Computation via Arrogance Sampling |

markdown | Markdown rendering for R |

marked | R Code for mark-recapture analysis |

MarkedPointProcess | Analysis of Marks of Marked Point Processes |

markerSearchPower | Power calculation for marker detection strategies in Genome-wide Association Studies |

maRketSim | Market simulator for R |

markovchain | |

marmap | Import, plot and analyze bathymetric and topographic data |

marqLevAlg | An algorithm for least-squares curve fitting |

MARSS | Multivariate Autoregressive State-Space Modeling |

MASS | Support Functions and Datasets for Venables and Ripley's MASS |

MASSI | |

MASSTIMATE | Body Mass Estimation Equations for Vertebrates |

MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |

MAT | Multidimensional Adaptive Testing (MAT) |

Matching | Multivariate and Propensity Score Matching with Balance Optimization |

MatchIt | MatchIt: Nonparametric Preprocessing for Parametric Casual Inference |

mathgraph | Directed and undirected graphs |

maticce | Mapping Transitions in Continuous Character Evolution |

matie | Measuring Association and Testing Independence Efficiently |

matlab | MATLAB emulation package |

Matrix | Sparse and Dense Matrix Classes and Methods |

matrixcalc | Collection of functions for matrix calculations |

MatrixEQTL | Matrix eQTL: Ultra fast eQTL analysis via large matrix operations |

MatrixModels | Modelling with Sparse And Dense Matrices |

matrixpls | |

matrixStats | Methods that apply to rows and columns of a matrix |

MATTOOLS | Modern Calibration Functions for the Modern Analog Technique (MAT) |

MAVTgsa | |

MaXact | Exact max-type Cochran-Armitage trend test(CATT) |

maxent | Low-memory Multinomial Logistic Regression with Support for Text Classification |

maxLik | Maximum Likelihood Estimation |

maxlike | Model species distributions by estimating the probability of occurrence using presence-only data. |

maxLinear | Conditional Samplings for Max-Linear Models |

maxstat | Maximally Selected Rank Statistics |

MBA | Multilevel B-spline Approximation |

MBCluster.Seq | Model-Based Clustering for RNA-seq Data |

MBESS | MBESS |

MBI | (M)ultiple-site (B)iodiversity (I)ndices Calculator |

mblm | Median-Based Linear Models |

MBmca | Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R |

mbmdr | Model Based Multifactor Dimensionality Reduction |

mboost | Model-Based Boosting |

mc2d | Tools for Two-Dimensional Monte-Carlo Simulations |

MCAPS | MCAPS data and results |

mcbiopi | Matrix Computation Based Identification Of Prime Implicants |

mcclust | Process an MCMC Sample of Clusterings |

MCE | Tools for evaluating Monte Carlo Error |

mcga | Machine coded genetic algorithms for real-valued optimization problems |

mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |

mcGlobaloptim | |

mchof | multicore higher-order functions |

MChtest | Monte Carlo hypothesis tests with Sequential Stopping |

mcIRT | IRT models for multiple choice items (mcIRT) |

MCLIME | Simultaneous Estimation of the Regression Coefficients and Precision Matrix |

mcll | Monte Carlo Local Likelihood Estimation |

mclogit | Mixed Conditional Logit |

mclust | Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation |

mclust02 | Model-based cluster analysis (older version) |

mcmc | Markov Chain Monte Carlo |

MCMC.qpcr | Bayesian analysis of qRT-PCR data |

MCMCglmm | MCMC Generalised Linear Mixed Models |

MCMChybridGP | Hybrid Markov chain Monte Carlo using Gaussian Processes |

MCMCpack | Markov chain Monte Carlo (MCMC) Package |

mcmcplots | Create Plots from MCMC Output |

mcmcse | Monte Carlo Standard Errors for MCMC |

MCMCtGARCH | MCMCtGARCH package |

MCMCtGARCHM | MCMCtGARCHM package |

MCMCtNARCH | MCMCtNARCH package |

mco | Multi criteria optimization algorithms and related functions |

Mcomp | Data from the M-competitions |

MConjoint | Conjoint Analysis through Averaging of Multiple Analyses |

MCPAN | Multiple comparisons using normal approximation |

McParre | Run a Regenerative Markov chain in Parallel on a Cluster |

mcpd | Tools to analyse and use passport data for biological collections. |

MCPerm | A Monte Carlo permutation method for multiple test correlation |

MCPMod | Design and Analysis of Dose-Finding Studies (see also DoseFinding package) |

mcprofile | Multiple Contrast Profiles |

mcr | Method Comparison Regression |

mcsm | Functions for Monte Carlo Methods with R |

McSpatial | |

MCUSUM | Multivariate Cumulative Sum (MCUSUM) Control Chart |

mda | Mixture and flexible discriminant analysis |

MDD | Minimum Detectable Difference Calculations |

mded | Measuring the difference between two empirical distributions |

MDM | Multinomial Diversity Model |

MDPtoolbox | Markov Decision Processes toolbox |

MDR | Detect gene-gene interactions using multifactor dimensionality reduction |

MDSGUI | A GUI for interactive MDS in R |

meboot | Maximum Entropy Bootstrap for Time Series |

mecdf | Multivariate Empirical Cumulative Distribution Functions |

medAdherence | Medication Adherence: Commonly Used Definitions |

mederrRank | Bayesian Methods for Identifying the Most Harmful Medication Errors |

mediation | R Package for Causal Mediation Analysis |

MeDiChI | MeDiChI ChIP-chip deconvolution library |

MeDiChISeq | |

MedOr | Median Ordering Statistical R package |

medSTC | A max-margin supervised Sparse Topical Coding Model |

MEET | MEET: Motif Elements Estimation Toolkit |

mefa | Multivariate Data Handling in Ecology and Biogeography |

mefa4 | Multivariate Data Handling with S4 Classes and Sparse Matrices |

meifly | Interactive model exploration using GGobi |

melody | Statistical Methods for the Quantitative Analysis of Song Spectrograms |

mem | Moving Epidemics Method R Package. |

memisc | Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation |

memoise | Memoise functions |

MEMSS | Data sets from Mixed-effects Models in S |

memuse | Estimate the memory usage of dense, in-core, numeric objects. |

MergeGUI | A GUI for Merging Datasets in R |

merror | Accuracy and Precision of Measurements |

MESS | Miscellaneous esoteric statistical scripts |

meta | Meta-Analysis with R |

MetABEL | meta-analysis of genome-wide SNP association results |

MetabolAnalyze | Probabilistic latent variable models for metabolomic data. |

metabolomics | A collection of functions for analysing metabolomics data |

Metabonomic | GUI for Metabonomic Analysis |

metacom | Analysis of the 'elements of metacommunity structure' |

metacor | Meta-analysis of correlation coefficients |

Metadata | Collates Metadata for Climate Surface Stations |

MetaDE | MetaDE: Microarray meta-analysis for differentially expressed gene detection |

metafor | Meta-Analysis Package for R |

metagen | Generalised Inference in the Random Effects Meta Regression Model |

metaLik | Likelihood inference in meta-analysis and meta-regression models. |

metaMA | Meta-analysis for MicroArrays |

metamisc | Diagnostic and prognostic meta analysis (metamisc) |

MetaPath | Perform the Meta-Analysis for Pathway Enrichment analysis (MAPE). |

MetaPCA | MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data |

MetaQC | MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis |

MetaSKAT | Meta analysis for SNP-set (Sequence) Kernel Association Test |

metatest | Fit and test metaregression models |

meteogRam | Tools for plotting meteograms |

Meth27QC | Meth27QC: sample quality analysis, and sample control analysis |

MethComp | Functions for analysis of agreement in method comparison studies. |

Metrics | Evaluation metrics for machine learning |

metRology | Support for metrological applications |

metrumrg | Pharmacometric tools for data preparation, modeling, simulation, and reporting |

mets | Analysis of Multivariate Event Times |

MetSizeR | |

MEWMA | Multivariate Exponentially Weighted Moving Average (MEWMA) Control Chart |

MExPosition | Multi-table ExPosition |

MF | |

MFDA | Model Based Functional Data Analysis |

MFDF | Modeling Functional Data in Finance |

MFHD | |

mFilter | Miscellaneous time series filters |

mfp | Multivariable Fractional Polynomials |

mfr | Minimal Free Resolutions of Graph Edge Ideals |

MFSAS | Creation and Evaluation of Multilevel Fixed and Sequential Sampling Plans |

mgcv | Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation |

MGLM | |

mgpd | mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II) |

mgraph | |

MHadaptive | General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling |

mhsmm | Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences. |

mht | Multiple Hypotheses Testing For Variable Selection |

mhurdle | Estimation of models with limited dependent variables |

mi | Missing Data Imputation and Model Checking |

mice | Multivariate Imputation by Chained Equations |

micEcon | Microeconomic Analysis and Modelling |

micEconAids | Demand Analysis with the Almost Ideal Demand System (AIDS) |

micEconCES | Analysis with the Constant Elasticity of Scale (CES) function |

micEconSNQP | Symmetric Normalized Quadratic Profit Function |

MiClip | A Model-based Approach to Identify Binding Sites in CLIP-Seq Data |

microbenchmark | Sub microsecond accurate timing functions. |

MicroDatosEs | |

micromap | Linked Micromap Plots |

micromapST | Linked Micromap Plots for U. S. States |

MicroStrategyR | MicroStrategyR Package |

midasr | |

MIfuns | Pharmacometric tools for data preparation, modeling, simulation, and reporting |

MigClim | Implementing dispersal into species distribution models |

migest | Useful R code for the Estimation of Migration |

migration.indices | Migration indices |

migui | Graphical User Interface of the mi Package |

MImix | Mixture summary method for multiple imputation |

mimR | A package for graphical modelling in R |

MindOnStats | Data sets included in Utts and Heckard's Mind on Statistics |

minerva | minerva: Maximal Information-Based Nonparametric Exploration R package for Variable Analysis |

minet | Mutual Information NETworks |

Miney | Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix) |

miniGUI | tktcl quick and simple function GUI. |

minimax | Minimax distribution family |

minpack.lm | R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK, plus support for bounds |

minPtest | Gene region-level testing procedure for SNP data, using the min P test resampling approach |

minqa | Derivative-free optimization algorithms by quadratic approximation |

minxent | Entropy Optimization Distributions |

miP | Multiple Imputation Plots |

MIPHENO | Mutant Identification through Probabilistic High throughput Enabled NOrmalization |

miRada | MicroRNA Microarray Data Analysis |

mirf | MULTIPLE IMPUTATION AND RANDOM FORESTS FOR UNOBSERVABLE PHASE, HIGH-DIMENSIONAL DATA |

mirt | Multidimensional Item Response Theory |

miRtest | combined miRNA- and mRNA-testing |

MISA | Bayesian Model Search and Multilevel Inference for SNP Association Studies |

misc3d | Miscellaneous 3D Plots |

miscF | Miscellaneous Functions |

miscFuncs | Miscellaneous Useful Functions |

MiscPsycho | Miscellaneous Psychometric Analyses |

miscTools | Miscellaneous Tools and Utilities |

missForest | Nonparametric Missing Value Imputation using Random Forest |

MissingDataGUI | A GUI for Missing Data Exploration |

missMDA | Handling missing values with/in multivariate data analysis (principal component methods) |

MissMech | Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random |

MiST | Mixed effects Score Test for continuous outcomes |

mistat | |

mistral | Methods in Structural Reliability |

MitISEM | Mixture of Student t Distributions using Importance Sampling and Expectation Maximization |

mitools | Tools for multiple imputation of missing data |

mix | Estimation/multiple Imputation for Mixed Categorical and Continuous Data |

mixAK | Multivariate normal mixture models and mixtures of generalized linear mixed models including model based clustering |

mixcat | Mixed effects cumulative link and logistic regression models |

mixdist | Finite Mixture Distribution Models |

mixedQF | Estimator with Qudratics Forms in Mixeds Models |

mixer | Random graph clustering |

mixexp | Design and analysis of mixture experiments |

mixfdr | Computes false discovery rates and effect sizes using normal mixtures |

mixlow | mixlow method for assessing drug synergism |

MixMAP | Implements the MixMAP algorithm |

MixMod | Analysis of Mixed Models |

mixOmics | Omics Data Integration Project |

mixPHM | Mixtures of proportional hazard models. |

mixRasch | Mixture Rasch Models with JMLE |

mixreg | Functions to fit mixtures of regressions. |

mixsep | Forensic Genetics DNA Mixture Separation |

MixSim | Simulating Data to Study Performance of Clustering Algorithms |

mixsmsn | Fitting finite mixture of scale mixture of skew-normal distributions . |

mixstock | functions for mixed stock analysis |

mixtools | Tools for analyzing finite mixture models |

mixture | Mixture Models for Clustering and Classification |

MixtureInf | Inference for Finite Mixture Models |

mizer | |

mkin | Routines for fitting kinetic models with one or more state variables to chemical degradation data |

MKLE | Maximum kernel likelihood estimation. |

MKmisc | Miscellaneous Functions from M. Kohl |

mkssd | Efficient multi-level k-circulant supersaturated designs |

mlbench | Machine Learning Benchmark Problems |

MLCM | Maximum Likelihood Conjoint Measurement |

mlCopulaSelection | Copula selection and fitting using maximum likelihood |

MLDA | Methylation Linear Discriminant Analysis (MLDA) |

mlDNA | Machine Learning-based Differential Network Analysis of Transcriptome Data |

MLDS | Maximum Likelihood Difference Scaling |

mlearning | Machine learning algorithms with unified interface and confusion matrices |

MLEcens | Computation of the MLE for bivariate (interval) censored data |

mlegp | Maximum Likelihood Estimates of Gaussian Processes |

MLEP | Maximum likelihood estimate of penetrance parameters |

mleur | Maximum likelihood unit root test |

mlgt | Multi-Locus Geno-Typing |

mlica | Independent Component Analysis using Maximum Likelihood |

mlica2 | Independent Component Analysis using Maximum Likelihood |

mlmmm | ML estimation under multivariate linear mixed models with missing values |

mlmRev | Examples from Multilevel Modelling Software Review |

mlogit | multinomial logit model |

mlogitBMA | Bayesian Model Averaging for Multinomial Logit Models |

MLPAstats | MLPA analysis to detect gains and loses in genes |

mlPhaser | Multi-Locus Haplotype Phasing |

mlr | |

MLRMPA | |

MM | The multiplicative multinomial distribution |

mmand | Mathematical Morphology in Any Number of Dimensions |

mmap | Map Pages of Memory |

mmcm | Modified Maximum Contrast Method |

mmds | |

mmeln | MMELN : Estimation of multinormal mixture distribution. |

mmeta | Multivariate Meta-Analysis Using Sarmanov Beta Prior Distributions |

MMG | Mixture Model on Graphs |

MMIX | Model selection uncertainty and model mixing |

mmlcr | Mixed-Mode Latent Class Regression |

mmm | an R package for analyzing multivariate longitudinal data with multivariate marginal models |

mmm2 | Multivariate marginal models with shared regression parameters |

mmod | |

MMS | Fixed effects Selection in Linear Mixed Models |

MMST | DATASETS FROM MMST |

MNM | Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks |

mnormt | The multivariate normal and t distributions |

MNP | R Package for Fitting the Multinomial Probit Model |

mnspc | Multivariate Nonparametric Statistical Process Control |

mobForest | |

Mobilize | Mobilize plots and functions |

moc | GENERAL NONLINEAR MIXTURES OF CURVES |

MOCCA | Multi-objective optimization for collecting cluster alternatives |

Modalclust | Hierarchical Modal Clustering |

modeest | Mode Estimation |

modehunt | Multiscale Analysis for Density Functions |

modelcf | Modeling physical computer codes with functional outputs using clustering and dimensionality reduction |

modelfree | Model-free estimation of a psychometric function |

ModelGood | Validation of risk prediction models |

ModelMap | Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps. |

modeltools | Tools and Classes for Statistical Models |

modiscloud | R tools for processing Level 2 Cloud Mask products from MODIS |

MODISTools | MODIS Subsetting Tools |

modTempEff | Modelling temperature effects using time series data |

moduleColor | Basic module functions |

MOJOV | Mojo Variants: Rare Variants analysis |

mokken | Mokken Scale Analysis in R |

mombf | Moment and Inverse Moment Bayes factors |

moments | Moments, cumulants, skewness, kurtosis and related tests |

Momocs | Shape Analysis of Outlines |

mondate | Keep track of dates in terms of months |

MonetDB.R | Connect MonetDB to R |

monmlp | Monotone multi-layer perceptron neural network |

monomvn | Estimation for multivariate normal and Student-t data with monotone missingness |

MonoPoly | Functions to fit monotone polynomials |

monoProc | strictly monotone smoothing procedure |

monreg | Nonparametric monotone regression |

moonsun | Basic astronomical calculations with R |

mopsocd | MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance |

Morpho | Calculations and visualisations related to Geometric Morphometrics |

MorseGen | |

MortalitySmooth | Smoothing and forecasting Poisson counts with P-splines |

mosaic | Project MOSAIC (mosaic-web.org) statistics and mathematics teaching utilities |

mosaicManip | Project MOSAIC (mosaic-web.org) manipulate examples. |

mota | Mean Optimal Transformation Approach |

motmot | Models of Trait Macroevolution on Trees |

moult | Models for Analysing Moult in Birds |

move | Visualizing and analyzing animal track data |

movMF | Mixtures of von Mises-Fisher Distributions |

mpa | CoWords Method |

mpc | MPC - Multiple Precision Complex Library |

MPCI | Multivariate Process Capability Indices (MPCI) |

MPDiR | Data sets and scripts for Modeling Psychophysical Data in R |

MPINet | The package can implement the network-based metabolite pathway identification of pathways. |

MplusAutomation | Automating Mplus Model Estimation and Interpretation |

mpm | Multivariate Projection Methods |

mpMap | Multi-parent RIL genetic analysis |

mpmcorrelogram | Multivariate Partial Mantel Correlogram |

mpmi | |

mpoly | Symbolic computation and more with multivariate polynomials |

mprobit | Multivariate probit model for binary/ordinal response |

MPSEM | |

mpt | Multinomial Processing Tree (MPT) Models |

MPTinR | Analyze Multinomial Processing Tree Models |

MPV | Data Sets from Montgomery, Peck and Vining's Book |

mQTL | |

mr | Marginal regresson models for dependent data |

mra | Analysis of Mark-Recapture data |

mratios | Inferences for ratios of coefficients in the general linear model |

MRCE | Multivariate regression with covariance estimation |

MRCV | Methods for Analyzing Multiple Response Categorical Variables (MRCVs) |

mrdrc | Model-robust concentration-response analysis |

mrds | Mark-Recapture Distance Sampling (mrds) |

mritc | MRI tissue classification. |

mRm | An R package for conditional maximum likelihood estimation in mixed Rasch models. |

MRMR | |

mRMRe | R package for parallelized mRMR ensemble feature selection |

mrp | |

mrpdata | |

mrt | Wright & London's Modern Regression Techniques |

MRwarping | |

msap | Statistical analysis for Methylation-sensitive Amplification Polymorphism data |

msarc | Draws diagrams (mis)representing the results of mass spec experiments |

MsatAllele | Visualizes the scoring and binning of microsatellite fragment sizes |

msBreast | Protein Mass Spectra Dataset from a Breast Cancer Study |

MSBVAR | Markov-Switching, Bayesian, Vector Autoregression Models |

msDilution | Protein Mass Spectra Dataset from a Dilution Experiment |

mseapca | Metabolite set enrichment analysis for factor loading in principal component analysis |

MSeasy | Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data |

MSeasyTkGUI | MSeasy Tcl/Tk Graphical User Interface |

mseq | Modeling non-uniformity in short-read rates in RNA-Seq data |

MSG | Data and functions for the book Modern Statistical Graphics |

msgl | High dimensional multiclass classification using sparse group lasso |

msgpackR | A library to serialize or unserialize data in MessagePack format |

msgps | Degrees of freedom of elastic net, adaptive lasso and generalized elastic net |

msir | Model-based Sliced Inverse Regression |

msm | Multi-state Markov and hidden Markov models in continuous time |

msme | Functions and Datasets for "Methods of Statistical Model Estimation". |

mspath | Multi-state Path-Dependent Models in Discrete Time |

msProcess | Protein Mass Spectra Processing |

msProstate | Protein Mass Spectra Dataset from a Prostate Cancer Study |

MSQC | Multivariate Statistical Quality Control |

msr | Morse-Smale approximation, regression and visualization |

msSurv | Nonparametric Estimation for Multistate Models |

mstate | Data preparation, estimation and prediction in multi-state models |

MSToolkit | The MSToolkit library for clinical trial design |

MSVAR | Markov Switching VAR |

MSwM | Fitting Markov Switching Models |

mtcreator | Creating MAGE-TAB files using mtcreator |

mtsc | Multivariate Timeseries Clusters |