Package reference: All

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

Package	Description
A3	A3: Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
aaMI	Mutual information for protein sequence alignments
abc	Tools for Approximate Bayesian Computation (ABC)
abcdeFBA	ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.
ABCExtremes	ABC Extremes
ABCp2	Approximate Bayesian Computational model for estimating P2
abctools	Algorithms for ABC summary statistics selection
abd	The Analysis of Biological Data
abind	Combine multi-dimensional arrays
aBioMarVsuit	A Biomarker Validation Suit for predicting Survival using gene signature.
abn	Data Modelling with Additive Bayesian Networks
AcceptanceSampling	Creation and evaluation of Acceptance Sampling Plans
ACCLMA	ACC & LMA Graph Plotting
accuracy	Tools for testing and improving accuracy of statistical results.
ACD	Categorical data analisys with complete or missing responses
Ace
acepack	ace() and avas() for selecting regression transformations
acer	The ACER Method for Extreme Value Estimation
aCGH.Spline	Robust spline interpolation for dual color array comparative genomic hybridisation data
ACNE	Affymetrix SNP probe-summarization using non-negative matrix factorization
aCRM	Convenience functions for analytical Customer Relationship Management
acs
Actigraphy	Actigraphy Data Analysis
actuar	Actuarial functions
ActuDistns	Functions for actuarial scientists
ada	ada: an R package for stochastic boosting
adabag	Applies multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging
ADaCGH	Analysis of data from aCGH experiments
adagio
adapt	adapt -- multidimensional numerical integration
AdaptFit	Adaptive Semiparametic Regression
AdaptFitOS	Adaptive Semiparametric Regression with Simultaneous Confidence Bands
adaptivetau	Tau-leaping stochastic simulation
adaptMCMC	Implementation of a generic adaptive Monte Carlo Markov Chain sampler
adaptsmoFMRI	Adaptive Smoothing of FMRI Data
adaptTest	Adaptive two-stage tests
ade4	Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences
ade4TkGUI	ade4 Tcl/Tk Graphical User Interface
adegenet	adegenet: an R package for the exploratory analysis of genetic and genomic data.
adehabitat	Analysis of habitat selection by animals
adehabitatHR	Home range Estimation
adehabitatHS	Analysis of habitat selection by animals
adehabitatLT	Analysis of animal movements
adehabitatMA	Tools to Deal with Raster Maps
adephylo	adephylo: exploratory analyses for the phylogenetic comparative method.
AdequacyModel	Adequacy of models
ADGofTest	Anderson-Darling GoF test
adimpro	Adaptive Smoothing of Digital Images
adk	Anderson-Darling K-Sample Test and Combinations of Such Tests
adlift	An adaptive lifting scheme algorithm
ADM3	An Interpretation of the ADM method - automated detection algorithm.
AdMit	Adaptive Mixture of Student-t distributions
ads	Spatial point patterns analysis
Aelasticnet	Bayesian Adaptive Elastic-Net for high dimensional sparse quantile regression models
AER	Applied Econometrics with R
afc	Calculate afc
afex	Analysis of Factorial Experiments
afmtools	Estimation, Diagnostic and Forecasting Functions for ARFIMA models
aftgee	Accelerated Failure Time Model with Generalized Estimating Equations
agce	analysis of growth curve experiments
AGD	Analysis of Growth Data
ageprior	Prior distributions for molecular dating
aggrisk	Estimate individual level risk using individual case data and spatially aggregated control data
agilp	Extracting and preprocessing Agilent express arrays
agRee	Various Methods for Measuring Agreement.
agreement	Statistical Tools for Measuring Agreement
agricolae	Statistical Procedures for Agricultural Research
agridat	Agricultural datasets
agrmt	Calculate agreement
AGSDest	Estimation in adaptive group sequential trials
agsemisc	Miscellaneous plotting and utility functions
ahaz	Regularization for semiparametric additive hazards regression
AICcmodavg	Model selection and multimodel inference based on (Q)AIC(c)
AID	An R Package to Estimate Box-Cox Power Transformation Parameter
AIGIS	Areal Interpolation for GIS data
AIM	AIM: adaptive index model
AIS	Tools to look at the data ("Ad Inidicia Spectata")
akima	Interpolation of irregularly spaced data
akmeans	Adaptive Kmeans algorithm based on threshold
alabama	Constrained nonlinear optimization
ALDqr	Algorithm Laplace density quantile regression
AlgDesign	Algorithmic Experimental Design
ALKr	Generate Age-Length Keys for fish populations
allan	Automated Large Linear Analysis Node
allanvar	Allan Variance Analysis
allelematch	Identifying unique multilocus genotypes where genotyping error and missing data may be present
AlleleRetain	Allele Retention, Inbreeding, and Demography
allelic	A fast, unbiased and exact allelic exact test
AllPossibleSpellings	Computes all of a word's possible spellings.
alphahull	Generalization of the convex hull of a sample of points in the plane
alphashape3d	Implementation of the 3D alpha-shape for the reconstruction of 3D sets from a point cloud
alr3	Data to accompany Applied Linear Regression 3rd edition
alr4	Data to accompany Applied Linear Regression 4rd edition
ALS	multivariate curve resolution alternating least squares (MCR-ALS)
AMA	Anderson-Moore Algorithm
amap	Another Multidimensional Analysis Package
AMAP.Seq	Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
amba	Additive Models for Business Applications
amei	Adaptive Management of Epidemiological Interventions
Amelia	Amelia II: A Program for Missing Data
amen	Additive and multiplicative effects modeling of networks and relational data
amer	Additive mixed models with lme4
AmericanCallOpt	This package includes pricing function for selected American call options with underlying assets that generate payouts.
AMORE	A MORE flexible neural network package
anacor	Simple and Canonical Correspondence Analysis.
anaglyph	3D Anaglyph Plots
analogue	Analogue and weighted averaging methods for palaeoecology
AnalyzeFMRI	Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format.
anametrix	Bidirectional connector to Anametrix API
anapuce	Tools for microarray data analysis
AncestryMapper	Ancestry Mapper
anchors	Statistical analysis of surveys with anchoring vignettes
andrews	Andrews curves
anesrake	ANES Raking Implementation
Animal	Analyze time-coded animal behavior data
animation	A gallery of animations in statistics and utilities to create animations
anm	Analog model for downscaling
ANN	Feedforward Artificial Neural Network optimized by Genetic Algorithm
AnnotLists	AnnotLists: A tool to annotate multiple lists from a specific annotation file.
anoint	Analysis of interactions
ant	Version of ant specific to R
AnthropMMD	A GUI for Mean Measures of Divergence
antitrust	Antitrust Library
aod	Analysis of Overdispersed Data
aods3	Analysis of Overdispersed Data using S3 methods
AOfamilies	Aranda-Ordaz (AO) transformation families
apcluster	Affinity Propagation Clustering
ape	Analyses of Phylogenetics and Evolution
aplpack	Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and some slider functions
appell	Compute Appell's F1 hypergeometric function
apple	Approximate Path for Penalized Likelihood Estimators
approximator	Bayesian prediction of complex computer codes
APSIMBatch	Analysis the output of Apsim software
apsrtable	apsrtable model-output formatter for social science
apt	Asymmetric Price Transmission (apt)
apTreeshape	Analyses of Phylogenetic Treeshape
aqfig	Functions to help display air quality model output and monitoring data
aqp	Algorithms for Quantitative Pedology
aqr	Interface methods to use with an ActiveQuant Master Server
AquaEnv	AquaEnv - an integrated development toolbox for aquatic chemical model generation
ARAMIS	A R Adaptive Multiple Importance Sampling
aratio	Assessment ratio analysis
archetypes	Archetypal Analysis
ArDec	Time series autoregressive-based decomposition
ARES	Environment air pollution epidemiology: a library for time series analysis
arf3DS4	Activated Region Fitting, fMRI data analysis (3D).
arfima	Fractional ARIMA Time Series Modeling
argosfilter	Argos locations filter
argparse	Command line optional and positional argument parser.
arm	Data Analysis Using Regression and Multilevel/Hierarchical Models
aroma.affymetrix	Analysis of large Affymetrix microarray data sets
aroma.apd	A probe-level data file format used by aroma.affymetrix [DEPRECATED]
aroma.cn	Copy-number analysis of large microarray data sets
aroma.core	Core methods and classes used by aroma.* packages part of The Aroma Framework
aroma.light	Light-weight methods for normalization and visualization of microarray data using only basic R data types
ArrayBin	My First Collection of Functions
arrayhelpers	Convenience functions for arrays
arrayImpute	Missing imputation for microarray data
arrayMissPattern	Exploratory analysis of Missing patterns for microarray data
ars	Adaptive Rejection Sampling
ARTIVA	Infer a time-varying DBN network from time series data.
arules	Mining Association Rules and Frequent Itemsets
arulesNBMiner	Mining NB-Frequent Itemsets and NB-Precise Rules
arulesSequences	Mining frequent sequences
arulesViz	arulesViz - Visualizing Association Rules and Frequent Itemsets
asbio	A collection of statistical tools for biologists
ascii	Export R objects to several markup languages
ascrda	Augmented SCRDA
asd	Simulations for adaptive seamless designs
ash	David Scott's ASH routines
aspace	A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
aspect	Aspects of Multivariables
assertive	Readable check functions to ensure code integrity.
AssetPricing	Optimal pricing of assets with fixed expiry date.
assist	A Suite of S-Plus Functions Implementing Smoothing Splines
AssotesteR	Statistical Tests for Genetic Association Studies
aster	Aster Models
aster2	Aster Models
astro	Astronomy Functions, Tools and Routines
astroFns	Astronomy: time and position functions, misc. utilities
astsa	Applied Statistical Time Series Analysis
asuR	Advanced statistics using R
asympTest	Asymptotic statistic
asypow	Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
AtelieR	A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
atm	Additive Term Models
atmi	Analysis of technical market indicators
AtmRay	Acoustic Traveltime Calculations for 1-D Atmospheric Models
attfad	Evaluation and comparison of expression data and GRNs
AUCRF	Variable Selection with Random Forest and the Area Under the Curve
audio	Audio Interface for R
audiolyzR	audiolyzR: Give your data a listen
audit	Bounds for Accounting Populations
auteur	Bayesian sampler of the trait-evolutionary process
automap	Automatic interpolation package
autopls	pls regression with backward selection of predictors
AutoSEARCH	General-to-Specific (GETS) Model Selection
aws	Adaptive Weights Smoothing
AWS.tools	R package to use Amazon Web Services
awsMethods	Class and Methods definitions for packages aws, adimpro, fmri, dwi
aylmer	A generalization of Fisher's exact test
B2Z	Bayesian Two-Zone Model
BaBooN	Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data
BACCO	Bayesian Analysis of Computer Code Output (BACCO)
backfitRichards	Backfitted independent values of Richards curves
backtest	Exploring portfolio-based conjectures about financial instruments
BACprior	Sensitivity of the Bayesian Adjustment for Confounding (BAC) algorithm to the choice of hyperparameter omega.
BADER	Bayesian Analysis of Differential Expression in RNA Sequencing Data
BAEssd	Bayesian Average Error approach to Sample Size Determination
bagRboostR	Ensemble bagging and boosting classifiers
BaM	Functions and datasets for books by Jeff Gill.
BAMD	Bayesian Association Model for Genomic Data with Missing Covariates
bamdit	Bayesian Meta-Analysis of diagnostic test data
bams
bandit
barcode	Barcode distribution plots
BARD	Better Automated ReDistricting
bark	Bayesian Additive Regresssion Kernels
Barnard	Barnard's Unconditional Test
BAS	Bayesian Model Averaging using Bayesian Adaptive Sampling
BaSAR	Bayesian Spectrum Analysis in R
base64	Base 64 encoder/decoder
base64enc	Tools for base64 encoding
baseline	Baseline Correction of Spectra
basicspace	A Package to Recover a Basic Space from Issue Scales
BaSTA	A package for estimating age-specific survival from incomplete capture-recapture/recovery data
batade	HTML reports and so on
batch	Batching Routines in Parallel and Passing Command-Line Arguments to R
BatchExperiments	Statistical experiments on batch computing clusters.
BatchJobs	Batch computing with R.
batchmeans	Consistent Batch Means Estimation of Monte Carlo Standard Errors
BayesBridge	Bridge Regression
bayesCGH	Bayesian analysis of array CGH data
bayesclust	Tests/Searches for significant clusters in genetic data.
BayesComm	Bayesian community ecology analysis
bayescount	Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC
BayesDA	Functions and Datasets for the book "Bayesian Data Analysis"
bayesDem	Graphical User Interface for bayesTFR, bayesLife and bayesPop
BayesFactor	Computation of Bayes factors for common designs
bayesGARCH	Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
bayesGDS	Functions to implement Generalized Direct Sampling
BayesLCA
bayesLife	Bayesian Projection of Life Expectancy
BayesLogit	Logistic Regression
bayesm	Bayesian Inference for Marketing/Micro-econometrics
bayesMCClust
bayesmix	Bayesian Mixture Models with JAGS
BayesNI	BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
bayespack	Numerical Integration for Bayesian Inference
BayesPanel	Bayesian Methods for Panel Data Modeling and Inference
bayesPop	Probabilistic Population Projection
bayespref	Hierarchical Bayesian analysis of ecological count data
bayesQR	Bayesian quantile regression
BayesQTLBIC	Bayesian multi-locus QTL analysis based on the BIC criterion
bayess	Bayesian Essentials with R
BayesSingleSub	Computation of Bayes factors for interrupted time-series designs
bayesSurv	Bayesian Survival Regression with Flexible Error and Random Effects Distributions
bayesTFR	Bayesian Fertility Projection
Bayesthresh	Bayesian thresholds mixed-effects models for categorical data
BayesTree	Bayesian Methods for Tree Based Models
BayesValidate	BayesValidate Package
BayesVarSel	Bayesian Variable selection in Linear Models
BayesX	R Utilities Accompanying the Software Package BayesX
BayesXsrc	R Package Distribution of the BayesX C++ Sources
BayHap	Bayesian analysis of haplotype association using Markov Chain Monte Carlo
BayHaz	R Functions for Bayesian Hazard Rate Estimation
BaylorEdPsych	R Package for Baylor University Educational Psychology Quantitative Courses
BaySIC	Bayesian Analysis of Significantly Mutated Genes in Cancer
BAYSTAR	On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
BB	Solving and Optimizing Large-Scale Nonlinear Systems
bbemkr	Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
BBmisc	Miscellaneous helper functions for B. Bischl.
bbmle	Tools for general maximum likelihood estimation
BBMM	Brownian bridge movement model
bbo	Biogeography-Based Optimization
bc3net	BC3NET
BCA	Business and Customer Analytics
BCBCSF	Bias-corrected Bayesian Classification with Selected Features
BcDiag	Diagnostics plots for Bicluster Data
BCE	Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
BCEA	Bayesian Cost Effectiveness Analysis
Bchron	Bayesian radiocarbon chronologies and relative sea level analysis
Bclim	Bayesian Palaeoclimate Reconstruction from Pollen
bclust	Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data.
bcool	Bringing to light significant Columns correlated with Organism Labels
bcp	A Package for Performing a Bayesian Analysis of Change Point Problems
bcrm
bcv	Cross-Validation for the SVD (Bi-Cross-Validation)
bda	Density Estimation for Binned/Weighted Data
BDgraph	Graph determination based on birth-death MCMC
bdoc	Bayesian Discrete Ordered Classification of DNA Barcodes
bdpv	Inference and design for predictive values in binary diagnostic tests
bdsmatrix	Routines for Block Diagonal Symmetric matrices
beadarrayFilter	Bead filtering for Illumina bead arrays
beadarrayMSV	Analysis of Illumina BeadArray SNP data including MSV markers
beanplot	Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
bear	Average bioequivalence and bioavailability data analysis tool
beeswarm	The bee swarm plot, an alternative to stripchart
belief	Contains basic functions to manipulate belief functions and associated mass assignments
benchden	28 benchmark densities from Berlinet/Devroye (1994)
benchmark	Benchmark Experiments Toolbox
Benchmarking	Benchmark and frontier analysis using DEA and SFA
BenfordTests	Statistical Tests for Evaluating Conformity to Benford's Law
bentcableAR	Bent-Cable Regression for Independent Data or Autoregressive Time Series
ber	Batch Effects Removal
Bergm	Bayesian analysis for exponential random graph models
BerkeleyEarth
Bessel	Bessel -- Bessel Functions Computations and Approximations
bestglm	Best Subset GLM
betafam	Detecting rare variants for quantitative traits using nuclear families
betapart	Partitioning beta diversity into turnover and nestedness components
betaper	Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
betareg	Beta Regression
betategarch	Estimation and simulation of the first-order Beta-t-EGARCH model
betfairly	Access Betfair API from R
bethel	Bethel's algorithm.
bfa	Bayesian Factor Analysis
bfast	Breaks For Additive Season and Trend (BFAST)
bfp	Bayesian Fractional Polynomials
bgeva	Binary Generalized Extreme Value Additive Models
bgmm	Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling.
BGSIMD	Block Gibbs Sampler with Incomplete Multinomial Distribution
BH	The Boost C++ Libraries
Bhat	General likelihood exploration
BHH2	Useful Functions for Box, Hunter and Hunter II
biasbetareg	Bias correction of the parameter estimates of the beta regression model
BiasedUrn	Biased Urn model distributions
bibtex	bibtex parser
biclust	BiCluster Algorithms
bicreduc	Reduction algorithm for the NPMLE for the distribution function of bivariate interval-censored data
BiDimRegression	Calculates the bidimensional regression between two 2D configurations
bifactorial	Inferences for bi- and trifactorial trial designs
biganalytics	A library of utilities for big.matrix objects of package bigmemory.
bigdata	Big Data Analytics
BiGGR	Creates an interface to BiGG database, provides a framework for simulation and produces flux graphs
biglars	Scalable Least-Angle Regression and Lasso
biglm	bounded memory linear and generalized linear models
bigmatrix	Tuning Insensitive Graph Estimation and Regression
bigmemory	Manage massive matrices with shared memory and memory-mapped files
bigmemory.sri	A shared resource interface for Bigmemory Project packages
bigml	R bindings for the BigML API
biGraph	Analysis Toolbox For Bipartite Graphs
bigrf	Big Random Forests: Classification and Regression Forests for Large Data Sets
bigRR	Generalized Ridge Regression (with special advantage for p >> n cases)
bigtabulate	table-, tapply-, and split-like functionality for matrix and big.matrix objects.
BigTSP	Top Scoring Pair based methods for classification
bild	bild: a package for BInary Longitudinal Data
bim	Bayesian Interval Mapping Diagnostics
bimetallic	Power for SNP analyses using silver standard cases
binarySimCLF	Simulates Correlated Binary Data
BINCO	Bootstrap Inference for Network COstruction
bindata	Generation of Artificial Binary Data
binGroup	Evaluation and experimental design for binomial group testing
binhf	Haar-Fisz functions for binomial data
binMto	Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
BinNor	Simultaneous generation of multivariate binary and normal variates.
binom	Binomial Confidence Intervals For Several Parameterizations
binomialcftp	Generates binomial random numbers via the coupling from the past algorithm
binomlogit	Efficient MCMC for Binomial Logit Models
binomSamSize	Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
binomTools	Performing diagnostics on binomial regression models
binseqtest	Exact Binary Sequential Designs and Analysis
bio.infer	Predict environmental conditions from biological observations
Biodem	Biodemography functions
BiodiversityR	GUI for biodiversity, suitability and community ecology analysis
Biograph	Explore life histories
BioIDMapper	Mapping between BioIDs
biom	An interface package (beta) for the BIOM file format.
BioMark	Find biomarkers in two-class discrimination problems
BiomarkeR	Paired (pBI) and Unpaired Biomarker Identifier (uBI) including a method to infer networks.
biomod2	Ensemble platform for species distribution modeling
bionetdata
biopara	Self-contained parallel system for R
BioPhysConnectoR	BioPhysConnectoR
biOps	Image processing and analysis
biOpsGUI	GUI for Basic image operations
bios2mds	From BIOlogical Sequences to MultiDimensional Scaling
BioStatR	Initiation
bipartite	Visualising bipartite networks and calculating some (ecological) indices.
BiplotGUI	Interactive Biplots in R
birch	Dealing with very large datasets using BIRCH
bise	Auxiliary functions for phenological data analysis
bisectr	Tools to find bad commits with git bisect
biseVec	Auxiliary functions for phenological data analysis
bisoreg	Bayesian Isotonic Regression with Bernstein Polynomials
bit	A class for vectors of 1-bit booleans
bit64
bitops	Bitwise Operations
bivarRIpower	Sample size calculations for bivariate longitudinal data
bivpois	Bivariate Poisson Models Using The EM Algorithm
biwavelet	Conduct univariate and bivariate wavelet analyses
biwt	Functions to compute the biweight mean vector and covariance & correlation matrices
BlakerCI	Blaker's binomial confidence limits
BLCOP	Black-Litterman and copula-opinion pooling frameworks
blender	Analyze biotic homogenization of landscapes
blighty	United Kingdom coastlines
blm	Binomial linear and linear-expit regression
blme	Bayesian Linear Mixed-Effects models
blockcluster	Co-Clustering package for Binary, Contingency and Continuous data-sets.
BlockMessage	Creates strings that show a text message in 8 by 8 block letters
blockmodeling	An R package for Generalized and classical blockmodeling of valued networks
blockrand	Randomization for block random clinical trials
blockTools	Block, assign, and diagnose potential interference in randomized experiments
BLR	Bayesian Linear Regression
BMA	Bayesian Model Averaging
bmd	Benchmark dose analysis for dose-response data
bmem	Mediation analysis with missing data using bootstrap
Bmix	Bayesian Sampling for Stick-breaking Mixtures
bmk	MCMC diagnostics package
BMN	The pseudo-likelihood method for pairwise binary markov networks
bmp	Read Windows Bitmap (BMP) images
bmrm	Bundle Methods for Regularized Risk Minimization Package
BMS	Bayesian Model Averaging Library
bnlearn	Bayesian network structure learning, parameter learning and inference
BNPdensity	Ferguson-Klass type algorithm for posterior normalized random measures
bnpmr	Bayesian monotonic nonparametric regression
boa	Bayesian Output Analysis Program (BOA) for MCMC
BOG	Bacterium and virus analysis of Orthologous Groups (BOG) is a package for identifying differentially regulated genes in the light of gene functions.
boilerpipeR	Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
Bolstad	Bolstad functions
Bolstad2	Bolstad functions
boolean	Boolean Binary Response Models
boolfun	Cryptographic Boolean Functions
BoolNet	Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks
boost	Boosting Methods for Real and Simulated Data
boostSeq	Optimized GWAS cohort subset selection for resequencing studies
boot	Bootstrap Functions (originally by Angelo Canty for S)
BootCL	Bootstrapping test for chromosomal localization
bootES	Bootstrap Effect Sizes
bootfs	Use multiple feature selection algorithms to derive robust feature sets for two class classification problems.
BootPR	Bootstrap Prediction Intervals and Bias-Corrected Forecasting
bootRes	Bootstrapped Response and Correlation Functions
bootruin	A bootstrap test for the probability of ruin in the classical risk process
bootspecdens	Testing equality of spectral densities
bootStepAIC	Bootstrap stepAIC
bootstrap	Functions for the Book "An Introduction to the Bootstrap"
Boruta	A wrapper algorithm for all-relevant feature selection
boss	Boosted One-Step Statistics: Fast and accurate approximations for GLM, GEE and Mixed models for use in GWAS
BoSSA	a Bunch of Structure and Sequence Analysis
boussinesq	Analytic Solutions for (ground-water) Boussinesq Equation
bpca	Biplot of Multivariate Data Based on Principal Components Analysis
bpcp	Beta Product Confidence Procedure for Right Censored Data
bPeaks	bPeaks: a simple and intuitive approach for detection of basic peaks (bPeaks) from ChIP-seq data
BPHO	Bayesian Prediction with High-order Interactions
bpkde	Back-Projected Kernel Density Estimation
bqtl	Bayesian QTL mapping toolkit
BradleyTerry	Bradley-Terry Models -- this package is now deprecated in favour of 'BradleyTerry2'
BradleyTerry2	Bradley-Terry Models
BrailleR	Improved access for blind useRs
brainwaver	Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory.
breakage	SICM pipette tip geometry estimation
bReeze	Functions for wind resource assessment
brew	Templating Framework for Report Generation
brglm	Bias reduction in binomial-response GLMs.
bride	Brier score decomposition of probabilistic forecasts for binary events
brlr	Bias-reduced logistic regression
brnn	brnn (Bayesian regularization for feed-forward neural networks)
Brobdingnag	Very large numbers in R
broman	Karl Broman's R code
Brq	Bayesian analysis of quantile regression models.
BRugs	R interface to the OpenBUGS MCMC software
bs	Package for the Birnbaum-Saunders distribution
BSagri	Statistical methods for safety assessment in agricultural field trials
bscr	Bayesian parametric and semi-parametric analyses for semi-competing risks data
BSDA	Basic Statistics and Data Analysis
BsMD	Bayes Screening and Model Discrimination
bsml	Basis Selection from Multiple Libraries
bspec	Bayesian spectral inference
bspmma	bspmma: Bayesian Semiparametric Models for Meta-Analysis
bst	Gradient Boosting
bstats	Basic statistical functions for R
BTSPAS	Bayesian Time-Strat. Population Analysis
BTYD	Implementing Buy 'Til You Die Models
bujar	Buckley-James Regression for Survival Data with High-Dimensional Covariates
BurStFin
BurStMisc	Burns Statistics miscellaneous
bursts	Markov model for bursty behavior in streams
butler	Unit testing, profiling and benchmarking for R
bvenn	A Simple alternative to proportional Venn diagrams
bvls	The Stark-Parker algorithm for bounded-variable least squares
bvpSolve	Solvers for boundary value problems of ordinary differential equations
BVS	Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
bwsurvival	Nonparametric conditional survival function for successive survival times
c060	Additional variable selection, model validation and parameter tuning functions for glmnet models
c3net	Infering large-scale gene networks with C3NET
C50	C5.0 Decision Trees and Rule-Based Models
ca	Simple, Multiple and Joint Correspondence Analysis
cacher	Tools for caching and distributing statistical analyses
cacheSweave	Tools for caching Sweave computations
cacIRT	Classification accuracy and consistency under Item Response Theory
CaDENCE	Conditional Density Estimation Network Construction and Evaluation
CADFtest	This package performs the CADF unit root test proposed in Hansen (1995).
CADStat	Provides a GUI to several statistical methods useful for causal assessment.
caGUI	A Tcl/Tk GUI for the functions in the ca package
Cairo	R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output.
cairoDevice	Cairo-based cross-platform antialiased graphics device driver.
CalciOMatic	Automatic Calcium Imaging Analysis
calib	Statistical tool for calibration of plate based bioassays
calibFit	Statistical models and tools for assay calibration
calibrate	Calibration of Scatterplot and Biplot Axes
calibrator	Bayesian calibration of complex computer codes
CALINE3
calmate	CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation
CAMAN	Finite Mixture Models and meta-analysis tools - based on C.A.MAN
caMassClass	Processing & Classification of Protein Mass Spectra (SELDI) Data
cancerTiming	Estimation of temporal ordering of cancer abnormalities
candisc	Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
canvas	R graphics device targeting the HTML canvas element.
cape	Combined analysis of pleiotropy and epistasis
caper	Comparative Analyses of Phylogenetics and Evolution in R
capme	Covariate Adjusted Precision Matrix Estimation
capushe	Capushe, data-driven slope estimation and dimension jump
capwire	Estimates population size from non-invasive sampling
car	Companion to Applied Regression
CARBayes	Spatial areal unit modelling
CarbonEL	Carbon Event Loop
carcass	Estimation of the number of fatalities from carcass searches
cardidates	Identification of cardinal dates in ecological time series
care	High-Dimensional Regression and CAR Score Variable Selection
CARE1
caret	Classification and Regression Training
caretLSF	Classification and Regression Training LSF Style
caretNWS	Classification and Regression Training in Parallel Using NetworkSpaces
caribou	Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
caroline	A Collection of Database, Data Structure, Visualization, and Utility Functions for R
CARramps	Reparameterized and marginalized posterior sampling for conditional autoregressive models
CAscaling
caschrono	S
caspar	Clustered and sparse regression (CaSpaR)
cat	Analysis of categorical-variable datasets with missing values
catdata
CatDyn	Fishery Stock Assessment by Catch Dynamic Models
catenary	Fits a catenary to given points
catIrt	An R Package for Simulating IRT-Based Computerized Adaptive Tests
catmap	Case-control And Tdt Meta-Analysis Package
catnet	Categorical Bayesian Network Inference
caTools	Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
catR	Procedures to generate IRT adaptive tests (CAT)
catspec	Special models for categorical variables
CausalGAM	Estimation of Causal Effects with Generalized Additive Models
causalsens	Selection Bias Approach to Sensitivity Analysis for Causal Effects
CAVIAR	Collection of Functions for Processing, Visualizing and Analyzing Cambial Activity and Wood Formation Monitoring Data
cba	Clustering for Business Analytics
CBPS	R Package for Covariate Balancing Propensity Score
CCA	Canonical correlation analysis
CCAGFA	Bayesian canonical correlation analysis and group factor analysis
ccaPP	(Robust) canonical correlation analysis via projection pursuit
cccd	Class Cover Catch Digraphs
ccChooser	Developing a core collections
cccrm	CCC-RM
ccems	Combinatorially Complex Equilibrium Model Selection
ccgarch	Conditional Correlation GARCH models
cclust	Convex Clustering Methods and Clustering Indexes
CCM	Correlation classification method (CCM)
CCMtools	Clustering through "Correlation Clustering Model" (CCM) and cluster analysis tools.
CCP	Significance Tests for Canonical Correlation Analysis (CCA)
cda	Coupled dipole approximation in electromagnetic scattering
cdb	Reading and Writing Constant DataBases
CDFt	Statistical downscaling through CDF-transform
CDLasso	Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
CDM	Cognitive Diagnosis Modeling
CDNmoney	Components of Canadian Monetary and Credit Aggregates
CDVine	Statistical inference of C- and D-vine copulas
cec2005benchmark	Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
cec2013	Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
celestial	Collection of common astronomical conversion routines.
CellularAutomaton	One-Dimensional Cellular Automata
cellVolumeDist	Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
celsius	Retrieve Affymetrix microarray measurements and metadata from Celsius
cem	Coarsened Exact Matching
cems	Conditional expectation manifolds.
censReg	Censored Regression (Tobit) Models
CensRegMod	Fitting Normal and Student-t censored regression model.
CePa	Centrality-based pathway enrichment
cepp
cfa	Analysis of configuration frequencies (CFA)
CfEstimateQuantiles	Estimate quantiles using any order Cornish-Fisher expansion
CFL	Compensatory Fuzzy Logic
cg	Comparison of groups
cgAUC	Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
cgdsr	R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS).
CGene	Causal Genetic Analysis
cggd	Continuous Generalized Gradient Descent
cgh	Microarray CGH analysis using the Smith-Waterman algorithm
cghFLasso	Detecting hot spot on CGH array data with fused lasso regression.
cghseg	Segmentation methods for array CGH analysis
CGIwithR	CGI Programming in R
CGP	Composite Gaussian process models
ChainLadder	Statistical methods for the calculation of outstanding claims reserves in general insurance
ChangeAnomalyDetection	Change Anomaly Detection
changeLOS	Change in LOS
changepoint	An R package for changepoint analysis
charlson	Converts listwise icd9 data into comorbidity count and Charlson Index
CHCN	Canadian Historical Climate Network
cheatmap
cheb	Discrete Linear Chebyshev Approximation
chebpol	Multivariate Chebyshev interpolation
CheckDigit	Calculate and verify check digits
cheddar	Analysis and visualisation of ecological communities
chemCal	Calibration functions for analytical chemistry
chemometrics	Multivariate Statistical Analysis in Chemometrics
ChemometricsWithR	Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
ChemometricsWithRData	Data for package ChemometricsWithR
ChemoSpec	Exploratory Chemometrics for Spectroscopy
cherry	Multiple testing methods for exploratory research
chillR	Statistical methods for phenology analysis in temperate fruit trees
CHNOSZ	Chemical Thermodynamics and Activity Diagrams
ChoiceModelR	Choice Modeling in R
choplump	Choplump tests
chords	Estimation in respondent driven samples.
chplot	Augmented Convex Hull Plots
chron	Chronological objects which can handle dates and times
CHsharp	Choi and Hall Clustering in 3d
cimis	R package for retrieving data from CIMIS.
cin	Causal Inference for Neuroscience
cir	Nonparametric estimation of monotone functions via isotonic regression and centered isotonic regression
CircNNTSR	CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models
CircSpatial	Functions For Circular Spatial Data
CircStats	Circular Statistics, from "Topics in circular Statistics" (2001)
circular	Circular Statistics
cit	Causal Inference Test
CITAN	CITation ANalysis toolpack
citbcmst	Assigning tumor samples to CIT Breast Cancer Molecular Subtypes from gene expression data
citccmst	CIT Colon Cancer Molecular SubTypes Prediction
CityPlot	Visualization of structure and contents of a database
Ckmeans.1d.dp	Optimal distance-based clustering for one-dimensional data
clac	Clust Along Chromosomes, a method to call gains/losses in CGH array data
cladoRcpp	C++ implementations of phylogenetic calculations
CLAG	CLAG: an unsupervised non hierarchical clustering algorithm handling biological data
class	Functions for Classification
classGraph	Construct Graphs of S4 Class Hierarchies
classifly	Explore classification models in high dimensions
classify	Classification Accuracy and Consistency under IRT models.
classInt	Choose univariate class intervals
classPP	Projection Pursuit for supervised classification
cldr	Language Identifier based on CLD library
clhs
clim.pact	Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data.
climatol	Some Tools for Climatology: series homogenization, plus windrose and Walter&Lieth diagrams
climdex.pcic	PCIC implementation of Climdex routines
clime	Constrained L1-minimization for Inverse (covariance) Matrix Estimation
clines	Calculates Contour Lines
clinfun	Clinical Trial Design and Data Analysis Functions
ClinicalRobustPriors	Robust Bayesian Priors in Clinical Trials: An R Package for Practitioners
clinsig	Clinical significance functions.
clinUtiDNA	Clinical Utility of DNA Testing
cloudRmpi	Cloud-based MPI Parallel Processing for R (cloudRmpi)
cloudRmpiJars	Third-party jars for cloudRmpi
cloudUtil	Cloud Util Plots
clpAPI	R Interface to C API of COIN-OR Clp
CLSOCP	A smoothing Newton method SOCP solver
clue	Cluster ensembles
clues	Clustering Method Based on Local Shrinking
cluster	Cluster Analysis Extended Rousseeuw et al.
clusterCons	Calculate the consensus clustering result from re-sampled clustering experiments with the option of using multiple algorithms and parameter
clusterCrit	Clustering Indices
clusterfly	Explore clustering interactively using R and GGobi
clustergas	A hierarchical clustering method based on genetic algorithms
clusterGeneration	random cluster generation (with specified degree of separation)
clusterPower	Power calculations for cluster-randomized and cluster-randomized crossover trials
clusterRepro	Reproducibility of gene expression clusters
clusterSim	Searching for optimal clustering procedure for a data set
clusteval	Evaluation of Clustering Algorithms
clusthaplo	Clusthaplo
ClustOfVar	Clustering of variables
clustsig	Significant Cluster Analysis
clustTool	GUI for clustering data with spatial information
clustvarsel	Variable Selection for Model-Based Clustering
clv	Cluster Validation Techniques
clValid	Validation of Clustering Results
cmaes	Covariance Matrix Adapting Evolutionary Strategy
CMC	Cronbach-Mesbah Curve
cmm	Categorical Marginal Models
cMonkey	cMonkey integrated biclustering algorithm
cmprsk	Subdistribution Analysis of Competing Risks
cmprskContin	Continuous mark-specific relative risks for two groups
cmrutils	Misc Functions of the Center for the Mathematical Research
cncaGUI	Canonical Non-symmetrical Correspondence Analysis in R
CNVassoc	Association analysis of CNV data
coalescentMCMC	MCMC Algorithms for the Coalescent
coarseDataTools	A collection of functions to help with analysis of coarse infectious disease data
COBRA	Nonlinear Aggregation of Predictors
cobs	COBS -- Constrained B-splines (Sparse matrix based)
cobs99	Constrained B-splines -- outdated 1999 version
CoClust	Copula based cluster analysis
CoCo	Graphical modelling by log-linear models (an interface from R to CoCo)
CoCoCg	Graphical modelling by CG regressions
CoCoGraph	Interactive and dynamic graphs for the CoCo objects
cocor	Comparing correlations
cocorresp	Co-correspondence analysis methods
cocron	Statistical comparisons of two or more alpha coefficients
coda	Output analysis and diagnostics for MCMC
codep	Multiscale Codependence Analysis
codetools	Code Analysis Tools for R
coefficientalpha	Robust Cronbach's alpha with missing and non-normal data
coefplot	Plots Coefficients from Fitted Models
coenoflex	Gradient-Based Coenospace Vegetation Simulator
coexist	Species coexistence modeling and analysis
coin	Conditional Inference Procedures in a Permutation Test Framework
CoinMinD	Simultaneous Confidence Interval for Multinomial Proportion
colbycol	Read big text files column by column, sometimes much bigger than available RAM, into R.
colcor	Tests for column correlation in the presence of row correlation
CollocInfer	Collocation Inference for Dynamic Systems
coloc	Colocalisation tests of two genetic traits
colorfulVennPlot	Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data.
colorout	Colorize R output on terminal emulators
colorRamps	Builds color tables
colorspace	Color Space Manipulation
colortools	Tools for colors in an HSV color model
combinat	combinatorics utilities
CombMSC	Combined Model Selection Criteria
commandr	Command pattern in R
CommonJavaJars	Useful libraries for building a Java based GUI under R
CommonTrend	Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics.
comorbidities	Categorizes ICD-9-CM codes based on published comorbidity indices
ComPairWise	Compare phylogenetic or population genetic data alignments
compare	Comparing Objects for Differences
compareGroups	descriptives by groups
compareODM	comparison of medical forms in CDISC ODM format
CompareTests	Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens
comparison	Multivariate likelihood ratio calculation and evaluation
compeir	Reporting event-specific incidence rates for competing risks data
CompetingRiskFrailty	Competing Risk Model with Frailties for Right Censored Survival Data
compHclust	Complementary Hierarchical Clustering
complex.surv.dat.sim	Simulation of complex survival data
CompLognormal	Functions for actuarial scientists
CompModSA	Sensitivity Analysis for Complex Computer Models
compoisson	Conway-Maxwell-Poisson Distribution
COMPoissonReg	Conway-Maxwell Poisson (COM-Poisson) Regression
compositions	Compositional Data Analysis
compound.Cox	Regression estimation based on the compound shrinkage method under the Cox proportional hazard model
Compounding	Computing Continuous Distributions
compOverlapCorr	Comparing overlapping correlation coefficients
CompQuadForm	Distribution function of quadratic forms in normal variables
CompRandFld	Composite-likelihood based Analysis of Random Fields
compute.es	Compute Effect Sizes
ConConPiWiFun	This package contains an implementation of continuous convex piecewise (linear) functions (quadratic coming soon
concor	Concordance
concord	Concordance and reliability
concreg	Concordance regression
cond	Approximate conditional inference for logistic and loglinear models
condGEE	Parameter estimation in conditional GEE for recurrent event gap times
condmixt	Conditional Density Estimation with Neural Network Conditional Mixtures
CondReg	Condition Number Regularized Covariance Estimation
conf.design	Construction of factorial designs
confReg	Confidence Estimators for Individual Regression Predictions
conics	Plot Conics
conjoint	Conjoint analysis package
ConjointChecks	A package to check the cancellation axioms of conjoint measurement.
connectedness	Find disconnected subsets for a two-way classification
CONOR	CONOR
CONORData	CONORData
constrainedKriging	Constrained, covariance-matching constrained and universal point or block kriging
Containers	Object-Oriented Data Structures for R
contfrac	Continued fractions
conting	Bayesian analysis of contingency tables
contrast	A collection of contrast methods
ConvCalendar	Converts dates between calendars
ConvergenceConcepts	Seeing convergence concepts in action
convexHaz	Nonparametric MLE/LSE of convex hazard
COP	Variables selection for index models via correlation pursuit
copas	Statistical methods to model and adjust for bias in meta-analysis
copBasic	Basic Theoretical Copula, Empirical Copula, and Various Utility Functions
copula	Multivariate Dependence with Copulas
copulaedas	Estimation of Distribution Algorithms Based on Copulas
CopulaRegression	Bivariate Copula Based Regression Models
CopyDetect	An R Package for Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
corcounts	Generate correlated count random variables
CORElearn	CORElearn - classification, regression, feature evaluation and ordinal evaluation
corHMM	Analysis of binary character evolution
corpcor	Efficient Estimation of Covariance and (Partial) Correlation
corpora	Statistics and data sets for corpus frequency data
CorrBin	Nonparametrics with clustered binary data
CORREP	Multivariate Correlation Estimator and Statistical Inference Procedures.
corrgram	Plot a correlogram
corrperm	Permutation Tests of Correlation with Repeated Measurements
corrplot	Visualization of a correlation matrix
corrsieve	CorrSieve
COSINE	COndition SpecIfic sub-NEtwork
cosmoFns	Functions for cosmological distances, times, luminosities, etc.
cosso	Fit Regularized Nonparametric Regression Models Using COSSO Penalty.
costat	Time series costationarity determination
cotrend	Consistant Cotrend Rank Selection
COUNT	Functions, data and code for count data.
countrycode	Convert country names and country codes
CountsEPPM	Mean and variance modeling of count data
Covpath	COVPATH Package
covRobust	Robust Covariance Estimation via Nearest Neighbor Cleaning
covTest	Computes covariance test for adaptive linear modelling
CoxBoost	Cox models by likelihood based boosting for a single survival endpoint or competing risks
coxme	Mixed Effects Cox Models.
coxphf	Cox regression with Firth's penalized likelihood
coxphw	Weighted Cox regression
coxrobust	Robust Estimation in Cox Model
COZIGAM	Constrained and Unconstrained Zero-Inflated Generalized Additive Models with Model Selection Criterion
CPE	Concordance Probability Estimates in Survival Analysis
CpGassoc	Association between Methylation and a phenotype of interest
CPGchron	Create radiocarbon-dated depth chronologies
CPHshape	Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
cplexAPI	R Interface to C API of IBM ILOG CPLEX
cplm	Compound Poisson linear models
cpm
CPMCGLM	Correction of the pvalue after multiple coding
Cprob	Conditional probability function of a competing event
CR	Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
cramer	Multivariate nonparametric Cramer-Test for the two-sample-problem
crank	Completing ranks
crantastic	Various R tools for http://crantastic.org/
crawl	Fit continuous-time correlated random walk models to animal movement data
crblocks	Categorical Randomized Block Data Analysis
CreditMetrics	Functions for calculating the CreditMetrics risk model
crimCV	Group-Based Modelling of Longitudinal Data
CRM	Continual Reassessment Method (CRM) for Phase I Clinical Trials
crmn	CCMN and other noRMalizatioN methods for metabolomics data
crn	Downloads and Builds datasets for Climate Reference Network
crossdes	Construction of Crossover Designs
crosshybDetector	Detection of cross-hybridization events in microarray experiments
crossmatch	The Cross-match Test
crp.CSFP
crq	Censored Quantile Regression
crrSC	Competing risks regression for Stratified and Clustered data
crrstep	Stepwise covariate selection for the Fine & Gray competing risks regression model
crs	Categorical Regression Splines
CRTSize	Sample Size Estimation Functions for Cluster Randomized Trials
CrypticIBDcheck	Identifying cryptic relatedness in genetic association studies
csampling	Functions for Conditional Simulation in Regression-Scale Models
cshapes	CShapes Dataset and Utilities
cslogistic	Conditionally Specified Logistic Regression
csound	Accessing Csound functionality through R
csSAM	csSAM - cell-specific Significance Analysis of Microarrays
ctarma	Estimation and simulation of CARMA(p,q)
CTFS	The CTFS Large Plot Forest Dynamics Analyses
cthresh	Complex Wavelet Denoising software.
cts	Continuous Time Autoregressive Models
CTT	Classical Test Theory Functions
ctv	CRAN Task Views
cubature	Adaptive multivariate integration over hypercubes
Cubist	Rule- and Instance-Based Regression Modeling
cudaBayesreg	CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
cudaBayesregData	Data sets for the examples used in the package "cudaBayesreg"
cudia	CUDIA Cross-level Imputation
CUMP	Analyze Multivariate Phenotypes by Combining Univariate results
cumplyr	Extends ddply to allow calculation of cumulative quantities.
cumSeg	Change point detection in genomic sequences
currentSurvival	Estimation of CCI and CLFS Functions
curvclust	Curve clustering
curvetest	The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula...
curvHDR	curvHDR filtering of flow cytometry samples
cusp	Cusp Catastrophe Model Fitting Using Maximum Likelihood
cvAUC	Cross-Validated Area Under the ROC Curve Confidence Intervals
CvM2SL1Test	L1-version of Cramer-von Mises Two Sample Tests
CvM2SL2Test	Cramer-von Mises Two Sample Tests
cvplogistic	Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
cvq2	Calculate the predictive squared correlation coefficient
CVST	Fast Cross-Validation via Sequential Testing
CVThresh	Level-Dependent Cross-Validation Thresholding
cvTools	Cross-validation tools for regression models
cvxclustr	Splitting methods for convex clustering
cwhmisc	Miscellaneous Functions for math, plotting, printing, statistics, strings, and tools
cwm	Cluster Weighted Models by EM algorithm
cxxfunplus	extend cxxfunction by saving the dynamic shared objects
cxxPack	R/C++ Tools for Literate Statistical Practice
cyclones	Cyclone identification
cyphid	Cycle and Phase Identification for mastication data
cytoDiv	Cytometric diversity indices
DAAG	Data Analysis And Graphics data and functions
DAAGbio	Data Sets and Functions, for demonstrations with expression arrays and gene sequences
DAAGxtras	Data Sets and Functions, supplementary to DAAG
dae	Functions useful in the design and ANOVA of experiments
daewr	Design and Analysis of Experiments with R
dafs	Data analysis for forensic scientists
DAGGER	Consensus genetic maps
dagR	R functions for directed acyclic graphs
Daim	Diagnostic accuracy of classification models.
DAKS	Data Analysis and Knowledge Spaces
DALY
DALY	DALY Calculator - A GUI for stochastic DALY calculation in R
DAMisc	Dave Armstrong's Miscellaneous Functions
DandEFA
DART	Denoising Algorithm based on Relevance network Topology
DARTData	Example data set for DART package
darts	Statistical Tools to Analyze Your Darts Game
data.table	Extension of data.frame for fast indexing, fast ordered joins, fast assignment, fast grouping and list columns.
DatABEL	file-based access to large matrices stored on HDD in binary format
datacheck	Tools for checking data consistency
DataCombine	R tools for making it easier to combine and clean data sets.
dataframe	Fast data frames
DataFrameConstr	Constrained data frames and homogenous list classes
dataframes2xls	dataframes2xls writes data frames to xls files
datamap	A system for mapping foreign objects to R variables and environments
datamart	Unified access to various data sources
datamerge	Merging of overlapping and inconsistent data
dataone	DataONE R Client
dataonelibs	DataONE R Client Libraries
datautils	Support functions for packages VBmix, semisupKernelPCA, and patchPlot.
dataview	Human readable data presentation
date	Functions for handling dates
DATforDCEMRI	Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
dave	Functions for "Data Analysis in Vegetation Ecology"
Davies	The Davies quantile function
dbConnect	Provides a graphical user interface to connect with databases that use MySQL.
dbEmpLikeGOF	Goodness-of-fit and two sample comparison tests using sample entropy
dbEmpLikeNorm	Test for joint assessment of normality
DBGSA	methods of distance-based gene set functional enrichment analysis.
DBI	R Database Interface
DBKGrad	Discrete Beta Kernel Graduation of mortality data
dblcens	Compute the NPMLE of distribution from doubly censored data
dbmss	Distance-based measures of spatial structures
dbstats	Distance-based statistics (dbstats)
dcemri	A Package for Medical Image Analysis
dcemriS4	A Package for Medical Image Analysis (S4 implementation)
dcens	Doubly censoring estimation
DCGL	Differential CoExpression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
dclone	Data Cloning and MCMC Tools for Maximum Likelihood Methods
dclong.spt	Sequential Permutation Test
DCluster	Functions for the detection of spatial clusters of diseases
dcmle	Hierarchical Models Made Easy with Data Cloning
dcv	Conventional Cross-validation statistics for climate-growth model
ddalpha	DDalpha-Classifier
DDD
ddepn	Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
ddesolve	Solver for Delay Differential Equations
DDHFm	Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
ddst	Data driven smooth test
DEA	Data Envelopment Analysis.
deal	Learning Bayesian Networks with Mixed Variables
deamer	Deconvolution density estimation with adaptive methods for a variable prone to measurement error
debug	MVB's debugger for R
DECIDE	DEComposition of Indirect and Direct Effects
decon	Deconvolution Estimation in Measurement Error Models
Deducer	Deducer
DeducerExtras	Additional dialogs and functions for Deducer
DeducerMMR	A Deducer plugin for moderated multiple regressions and simple slopes analysis
DeducerPlugInExample	Deducer Plug-in Example
DeducerPlugInScaling	Reliability and factor analysis plugin
DeducerSpatial	Deducer for spatial data analysis
DeducerSurvival	Add Survival Dialogue to Deducer
DeducerText	Deducer GUI for Text Data
deducorrect	deducorrect: Deductive correction, deductive imputation, and deterministic correction.
Defaults	Create Global Function Defaults
degenes	Detection of differentially expressed genes.
degreenet	Models for Skewed Count Distributions Relevant to Networks
Delaporte	Statistical functions for the Delaporte distribution
deldir	Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
delftfews	delftfews R extensions
delt	Estimation of multivariate densities with adaptive histograms
deltaPlotR	Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
DEMEtics	Evaluating the genetic differentiation between populations based on Gst and D values.
demi	Differential Expression from Multiple Indicators
demogR	Analysis of age-structured demographic models
demography	Forecasting mortality, fertility, migration and population data
dendroextras	Extra functions to cut, label and colour dendrogram clusters
DendSer	Dendrogram seriation: ordering for visualisation
denpro	Visualization of multivariate, functions, sets, and data
denstrip	Density strips and other methods for compactly illustrating distributions
DEoptim	Global optimization by Differential Evolution
Depela	Depela
depend.truncation
depmix	Dependent Mixture Models
depmixS4	Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depth	Depth functions tools for multivariate analysis
depthTools	Depth Tools Package
descr	Descriptive statistics
DescribeDisplay	R interface to DescribeDisplay (GGobi plugin)
deseasonalize	Optimal deseasonalization for geophysical time series using AR fitting
Design	Design Package
designGG	Computational tool for designing genetical genomics experiments.
DesignPatterns	Design Patterns in R to build reusable object-oriented software
desirability	Desirabiliy Function Optimization and Ranking
desire	Desirability functions
deSolve	General solvers for initial value problems of ordinary differential equations (ODE), partial differential equations (PDE), differential algebraic equations (DAE), and delay differential equations (...
detect	Analyzing Wildlife Data with Detection Error
deTestSet	Testset for differential equations
detrendeR	Start the detrendeR Graphical User Interface (GUI)
DetSel	A computer program to detect markers responding to selection
devEMF	EMF graphics output device
Devore5	Data sets from Devore's "Prob and Stat for Eng (5th ed)"
Devore6	Data sets from Devore's "Prob and Stat for Eng (6th ed)"
Devore7	Data sets from Devore's "Prob and Stat for Eng (7th ed)"
devtools	Tools to make developing R code easier
df2json	Convert a dataframe to JSON
dfcrm	Dose-finding by the continual reassessment method
dfoptim	Derivative-free Optimization
dglars	Differential Geometric LARS (dgLARS) method
dglm	Double generalized linear models
dgmb	dgmb Simulating data for PLS structural models
dgof	Discrete Goodness-of-Fit Tests
dhglm	Double Hierarchical Generalized Linear Models
DiagnosisMed	Diagnostic test accuracy evaluation for medical professionals.
diagram	Functions for visualising simple graphs (networks), plotting flow diagrams
DiagTest3Grp	Diagnostic test summary measures for three ordinal groups
diamonds	Analysis and sampling grids from diamond partitions
dice	Calculate probabilities of various dice-rolling events
DiceDesign	Designs of Computer Experiments
DiceEval	Construction and evaluation of metamodels
DiceKriging	Kriging methods for computer experiments
DiceOptim	Kriging-based optimization for computer experiments
DiceView	Plot methods for computer experiments design and surrogate.
dichromat	Color Schemes for Dichromats
dicionariosIBGE	Dictionaries for reading microdata surveys from IBGE
DICOM	Import medical imaging data using the DICOM Standard
dielectric	Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
DierckxSpline	R companion to "Curve and Surface Fitting with Splines"
diff	Statistics: What's the Difference?
diffdepprop	Calculates Confidence Intervals for two Dependent Proportions
diffEq	Functions from the book Solving Differential Equations in R
diffractometry	Baseline identification and peak decomposition for x-ray diffractograms
diffusionMap	Diffusion map
difR	Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics
digeR	GUI tool for analyzing 2D DIGE data
digest	Create cryptographic hash digests of R objects
Digiroo2	An application programming interface for generating null models of social contacts based on individuals' space use
digitize	digitize : a plot digitizer in R
DIME	DIME (Differential Identification using Mixture Ensemble)
dinamic	DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
diptest	Hartigan's dip test statistic for unimodality - corrected code
DIRECT	Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
directlabels	Direct labels for multicolor plots in lattice or ggplot2
dirichlet	Dirichlet model of consumer buying behavior for marketing research
DirichletReg	Dirichlet Regression in R
dirmult	Estimation in Dirichlet-Multinomial distribution.
disclap	Discrete Laplace Exponential Family
disclapmix	Discrete Laplace mixture inference using the EM algorithm
DiscreteInverseWeibull	Discrete inverse Weibull distribution
DiscreteLaplace
discreteMTP	Multiple testing procedures for discrete test statistics
discreteRV	discreteRV
discretization	Data preprocessing, discretization for classification.
discrimARTs	Discrimination of Alternate Reproductive Tactics (ARTs).
DiscriMiner	Tools of the Trade for Discriminant Analysis
diseasemapping	Calculate observed and expected disease incidence counts from a case file and population data.
dismo	Species distribution modeling
disp2D	2D Hausdorff and Simplex Dispersion Orderings
displayHTS	displayHTS
dispmod	Dispersion models
Distance	A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations.
distfree.cr	Distribution-free confidence region (distfree.cr)
distory	Distance Between Phylogenetic Histories
distr	Object oriented implementation of distributions
distrDoc	Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse
distrEllipse	S4 classes for elliptically contoured distributions
distrEx	Extensions of package distr
distributions	Probability distributions based on TI-83 Plus
DistributionUtils	Distribution Utilities
distrMod	Object oriented implementation of probability models
distrRmetrics	Package distr classes for distributions from Rmetrics
distrSim	Simulation classes based on package distr
distrTeach	Extensions of package distr for teaching Stochastics/Statistics in secondary school
distrTEst	Estimation and Testing classes based on package distr
divagis	Provides tools for quality checks of georeferenced plant species accessions.
diveMove	Dive analysis and calibration
diversitree	diversitree: comparative phylogenetic analyses of diversification
diveRsity	Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In.
DiversitySampler	Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.
divisors	Find the divisors of a number
DivMelt	HRM Diversity Assay Analysis Tool
dixon	Nearest Neighbour Contingency Table Analysis
dkDNA	Diffusion kernels on a set of genotypes.
dlm	Bayesian and Likelihood Analysis of Dynamic Linear Models
dlmap	Detection Localization Mapping for QTL
dlmodeler	Generalized Dynamic Linear Modeler
dlnm	Distributed Lag Non-linear Models
dma	Dynamic model averaging
DMR	Delete or Merge Regressors for linear model selection.
dmRTools	Data Management Reporting Tool Version 1.0.1
dmt	Dependency Modeling Toolkit
DMwR	Functions and data for "Data Mining with R"
dna	Differential Network Analysis
DNAtools	Tools for analysing forensic genetic DNA data
DnE	DnE(Distribution and Equation)
DOBAD	Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains
doBy	doBy - Groupwise summary statistics, general linear contrasts, population means (least-squares-means), and other utilities
Dodge	Functions for Acceptance Sampling Ideas originated by H.F. Dodge
DoE.base	Full factorials, orthogonal arrays and base utilities for DoE packages
DoE.wrapper	Wrapper package for design of experiments functionality
doMC	Foreach parallel adaptor for the multicore package
Dominance	ADI (average dominance index) and social network graphs with dual directions
doMPI	Foreach parallel adaptor for the Rmpi package
doParallel	Foreach parallel adaptor for the parallel package
doRedis	Foreach parallel adapter for the rredis package
doRNG	Generic Reproducible Parallel Backend for foreach Loops
DoseFinding	Planning and Analyzing Dose Finding experiments
DOSim	Disease Analysis toolkit for gene set; Computation of similarities between DO terms and disease similarity between gene products; Module detection among the gene set and multilayer annotation for...
doSMP	Foreach parallel adaptor for the revoIPC package
doSNOW	Foreach parallel adaptor for the snow package
dostats
downloader	A package for downloading files over http and https
dpa	Dynamic Path Approach
dpglasso	Primal Graphical Lasso
dplR	Dendrochronology Program Library in R
DPM.GGM	Dirichlet Process Mixtures (DPM) and related models using Gaussian Graphical Models (GGM) for Sparse covariance estimation in heterogeneous samples
dpmixsim	Dirichlet Process Mixture model simulation for clustering and image segmentation
DPpackage	Bayesian nonparametric modeling in R
dprep	Data preprocessing and visualization functions for classification
DPw	Semiparametric Bayesian procedure for selecting a subset containing the weakest species with an acceptably high probability.
dr	Methods for dimension reduction for regression
drawExpression	Visualising R syntax through graphics
drc	Analysis of dose-response curves
drfit	Dose-response data evaluation
DRI	DR-Integrator
driftsel	Distinguishing drift and natural selection as causes of phenotypic differentiation
drm	Regression and association models for repeated categorical data
ds	Descriptive Statistics
dsample	Discretization-based Direct Random Sample Generation
dse	Dynamic Systems Estimation (time series package)
dse1	DSE (unbundled transition package).
dse2	DSE (unbundled transition package).
DSL	Distributed Storage and List
dsm	Density surface modelling of distance sampling data
DSpat	Spatial modelling for distance sampling data
DTComPair	Comparison of Binary Diagnostic Tests in a Paired Study Design
DTDA	Doubly truncated data analysis
dti	Analysis of diffusion weighted imaging (DWI) data
DTK	Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
dtt	Discrete Trigonometric Transforms
dtw	Dynamic Time Warping algorithms
dummies	Create dummy/indicator variables flexibly and efficiently
dvfBm	Discrete variations of a fractional Brownian motion
dvn	Access to The Dataverse Network API
DWD	DWD implementation based on A IPM SOCP solver
dyad	Analysis of dyadic observational data
dyn	Time Series Regression
dynamicGraph	dynamicGraph
dynamicTreeCut	Methods for detection of clusters in hierarchical clustering dendrograms.
dynamo	Dynamic Models
dynaTree	Dynamic trees for learning and design
DynClust	non-parametric denoising and clustering method of noisy images both indexed by time and space
dynCorr	Dynamic Correlation Package
dynGraph	Interactive visualization of dataframes and factorial planes
dynlm	Dynamic Linear Regression
dynpred	Companion package to "Dynamic Prediction in Clinical Survival Analysis"
dynsurv	Dynamic models for survival data
e1071	Misc Functions of the Department of Statistics (e1071), TU Wien
eaf	Plots of the Empirical Attainment Function
earlywarnings	Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
earth	Multivariate Adaptive Regression Spline Models
easi	EASI Demand System Estimation
EasyABC	EasyABC: performing efficient approximate Bayesian computation sampling schemes
easyanova	Analysis of variance and other important complementary analyzes
EasyHTMLReport	Easy to send HTML reports.
easystab	Clustering Perturbation Stability Analysis
EasyUpliftTree	Easy Uplift Tree Model
eba	Elimination-by-Aspects (EBA) Models
ebal	Entropy reweighting to create balanced samples
EbayesThresh	Empirical Bayes Thresholding and Related Methods
ebdbNet	Empirical Bayes Estimation of Dynamic Bayesian Networks
EBMAforecast	Ensemble BMA Forecasting
EBS	Exact Bayesian Segmentation
Ecdat	Data sets for econometrics
ecespa	Functions for spatial point pattern analysis
eco	R Package for Ecological Inference in 2x2 Tables
ecodist	Dissimilarity-based functions for ecological analysis
EcoHydRology	A community modeling foundation for Eco-Hydrology.
ecolMod	"A practical guide to ecological modelling - using R as a simulation platform"
ecoreg	Ecological regression using aggregate and individual data
ecosim	Toolbox for Aquatic Ecosystem Modeling
EcoTroph
ecp	Multiple Change Point Analysis of Multivariate Data
EDanalysis	A R Package For Gene Enrichment Disequilibrium Analysis
edcc	Economic Design of Control Charts
edci	Edge Detection and Clustering in Images
edesign	Maximum entropy sampling
EDISON	Software for network reconstruction and changepoint detection.
editrules	R package for parsing, applying, and manipulating data cleaning rules
EDR	Estimation of the effective dimension reduction (EDR) space
edrGraphicalTools	Provide tools for dimension reduction methods
edtdbg	Integrating R's debug() with Your Text Editor
eeptools	Convenience functions for education data
EffectiveDose	Estimation of the Effective Dose including Bootstrap confidence intervals
effects	Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models
EffectStars	Visualization of Categorical Response Models
egarch	EGARCH simulation and fitting
egonet	Tool for ego-centric measures in Social Network Analysis
eha	Event History Analysis
eHOF	Extended and enhanced Hierarchical Logistic Regression models (so called Huisman-Olff-Fresco models).
eigendog	EigenDog
eigeninv	Generates (dense) matrices that have a given set of eigenvalues
eigenmodel	Semiparametric factor and regression models for symmetric relational data
eiPack	eiPack: Ecological Inference and Higher-Dimension Data Management
eive	An algorithm for reducing errors-in-variable bias in simple linear regression
EL	Two-sample Empirical Likelihood
el.convex	empirical likelihood ratio tests for means
elasticnet	Elastic-Net for Sparse Estimation and Sparse PCA
elec	Collection of functions for statistical election audits
elec.strat	Functions for election audits using stratified random samples
ElectroGraph	Enhanced routines for plotting and analyzing valued relational data.
ElemStatLearn	Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman.
ellipse	Functions for drawing ellipses and ellipse-like confidence regions
elliptic	elliptic functions
elmNN	Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
elrm	Exact Logistic Regression via MCMC
EMA	Easy Microarray data Analysis
EMC	Evolutionary Monte Carlo (EMC) algorithm
EMCC	Evolutionary Monte Carlo (EMC) methods for clustering
EMCluster	EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
EMD	Empirical Mode Decomposition and Hilbert Spectral Analysis
emdbook	Ecological models and data (book support)
emdist	Earth Mover's Distance
emg	Exponentially Modified Gaussian (EMG) Distribution
EMJumpDiffusion	EM-Algorithm for Jump Diffusion processes
emma	Evolutionary model-based multiresponse approach
emme2	Read and Write to an EMME/2 databank
emoa	Evolutionary Multiobjective Optimization Algorithms
empiricalBayes
emplik	Empirical likelihood ratio for censored/truncated data
emplik2	Empirical-likelihood test (two-sample, censored data)
EmpLikeGOF	Goodness of Fit Test for Empirical Likelihood
EMT	Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
emu	Interface to the Emu Speech Database System
emudata	emudata - datasets for the emu package
emulator	Bayesian emulation of computer programs
EMV	Estimation of Missing Values for a Data Matrix
ENA	Ensemble Network Aggregation
enaR	Tools ecological network analysis (ena)
endogMNP	R Package for Fitting Multinomial Probit Models with Endogenous Selection
endorse
energy	E-statistics (energy statistics)
english	Translate integers into English
EngrExpt	Data sets from "Introductory Statistics for Engineering Experimentation"
ENmisc	Neuwirth miscellaneous
EnQuireR	A package dedicated to questionnaires
enrichvs	Enrichment assessment of virtual screening approaches
ensembleBMA	Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
ensembleMOS	Ensemble Model Output Statistics
entropy	Entropy and Mutual Information Estimation
envelope	Envelope normality test
epade	Easy Plots
Epi	A package for statistical analysis in epidemiology.
epibasix	Elementary Epidemiological Functions for Epidemiology and Biostatistics
epicalc	Epidemiological calculator
EpiContactTrace	Epidemiological tool for contact tracing.
EpiEstim	EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.
EpiModel	Mathematical Modeling of Infectious Disease
epinet	A collection of epidemic/network-related tools
epiR	An R package for the analysis of epidemiological data
epitools	Epidemiology Tools
epoc	EPoC (Endogenous Perturbation analysis of Cancer)
epr	Easy polynomial regression
epsi	Edge Preserving Smoothing for Images
EQL	Extended-Quasi-Likelihood-Function (EQL)
eqtl	Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
equate	Statistical Methods for Test Score Equating
EquiNorm	Normalize expression data using equivalently expressed genes
equivalence	Provides tests and graphics for assessing tests of equivalence
erer	Empirical Research in Economics with R
ergm	Fit, Simulate and Diagnose Exponential-Family Models for Networks
ergm.count	Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
ergm.userterms	User-specified terms for the statnet suite of packages
ergmharris	Local Health Department network data set
eRm	Extended Rasch Modeling
esd4all	esd4all
ESG	ESG - A package for asset projection
esotericR	esotericR articles from lemnica.com
ESPRESSO	Power Analysis and Sample Size Calculation
EstCRM	Calibrating Parameters for the Samejima's Continuous IRT Model
estout	Estimates Output
EstSimPDMP	Estimation of the jump rate and simulation for piecewise-deterministic Markov processes
etable	Easy Table
ETAS	Modeling earthquake data using Epidemic Type Aftershock Sequence model
ETC	Equivalence to control
ETLUtils	Utility functions to execute standard ETL operations (using package ff) on large data.
etm	Empirical Transition Matrix
EuclideanMaps	Displays Euclidean Maps
EvalEst	Dynamic Systems Estimation - extensions
evaluate	Parsing and evaluation tools that provide more details than the default.
evd	Functions for extreme value distributions
evdbayes	Bayesian Analysis in Extreme Value Theory
eVenn	eVenn: A powerful tool to compare lists and draw Venn diagrams.
events	Store and manipulate event data
eventstudies	Event study and extreme event analysis
EVER	Estimation of Variance by Efficient Replication
evir	Extreme Values in R
evora
evtree	Evolutionary Learning of Globally Optimal Trees
Exact	Unconditional Exact Tests
exact2x2	Exact Conditional Tests and Confidence Intervals for 2x2 tables
exactci	Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases
ExactCIdiff	Inductive Confidence Intervals for the difference between two proportions
exactLoglinTest	Monte Carlo Exact Tests for Log-linear models
exactmaxsel	Maximally selected statistics for binary response variables - Exact methods
ExactNumCI	Exact Confidence Interval for binomial proportions
ExactPath	Exact solution paths for regularized LASSO regressions with L_1 penalty
exactRankTests	Exact Distributions for Rank and Permutation Tests
ExactSampling	ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.
exams	Automatic Generation of Exams in R
ExceedanceTools	Confidence Regions for Exceedance Sets
excel.link	Convenient way to work with data in Microsoft Excel
ExomeCNV	Detect CNV and LOH from Exome Sequencing Data
ExomeDepth
ExPD2D	Exact Computation of Bivariate Projection Depth Based on Fortran Code
ExpDes	Experimental Designs package
ExpDes.pt	Pacote Experimental Designs (Portuguese)
expectreg	Expectile and Quantile Regression
experiment	experiment: R package for designing and analyzing randomized experiments
expert	Modeling without data using expert opinion
expm	Matrix exponential
expoRkit	Expokit in R
ExPosition	Exploratory analysis with the singular value decomposition.
expoTree	Calculate density dependent likelihood of a phylogenetic tree
expsmooth	Data sets from "Forecasting with exponential smoothing"
exptest	Tests for Exponentiality
exsic	Convenience functions for botanist to create exsiccatae indices
extfunnel	Additional Funnel Plot Augmentations
extraBinomial	Extra-binomial approach for pooled sequencing data
extracat	Categorical Data Analysis and Visualization
extrafont	Tools for using fonts
extrafontdb	Package for holding the database for the extrafont package
extraTrees	ExtraTrees method
extRemes	Extreme value toolkit.
extremevalues	Univariate outlier detection
eyetracking	Eyetracking Helper Functions
ez	Easy analysis and visualization of factorial experiments.
ezglm	selects significant non-additive interaction between two variables using fast GLM implementation.
ezsim	provide an easy to use framework to conduct simulation
FacPad	Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
FactMixtAnalysis	Factor Mixture Analysis with covariates
FactoClass	Combination of Factorial Methods and Cluster Analysis
FactoMineR	Multivariate Exploratory Data Analysis and Data Mining with R
factorQR	Bayesian quantile regression factor models
factualR	thin wrapper for the Factual.com server API
FAdist	Distributions that are sometimes used in hydrology
Fahrmeir	Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz
fail	File Abstraction Interface Layer (FAIL) mimicking a key-value store
FAiR	Factor Analysis in R
fairselect	Feature Annealed Independence Rules (demo)
faisalconjoint
fame	Interface for FAME time series database
Familias	Probabilities for Pedigrees given DNA data
FAmle	Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
FAMT	Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
fanc	Penalized likelihood factor analysis via nonconvex penalty
fANCOVA	Nonparametric Analysis of Covariance
fanovaGraph	Building Kriging models from FANOVA graphs
fanplot	Visualisation of sequential probability distributions using fan charts.
FAOSTAT	A complementary package to the FAOSTAT database and the Statistical Yearbook of the Food and Agricultural Organization of the United Nations.
faoutlier	Influential case detection methods for factor analysis and SEM
far	Modelization for Functional AutoRegressive processes
faraway	Functions and datasets for books by Julian Faraway.
fArma	ARMA Time Series Modelling
farmR	Mixed Integer model of Arable Farms
farsi	Translate integers into persian
fAsianOptions	EBM and Asian Option Valuation
fAssets	Rmetrics - Assets Selection and Modelling
fast	Implementation of the Fourier Amplitude Sensitivity Test (FAST)
fastclime	A fast solver for constrained l1 minimization approach to sparse precision matrix estimation
fastcluster	Fast hierarchical clustering routines for R and Python
fastcox	Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
fastGHQuad	Fast Rcpp implementation of Gauss-Hermite quadrature
fastICA	FastICA Algorithms to perform ICA and Projection Pursuit
FastImputation	Learn from training data then quickly fill in missing data.
fastmatch	Fast match() function
FastPCS	R package to compute the FastPCS Algorithm
fastR	Data sets and utilities for Foundations and Applications of Statistics by R Pruim
FastRWeb	Fast Interactive Framework for Web Scripting Using R
fastSOM	Fast Calculation of Spillover Measures
fastVAR	fastVAR
favir	Formatted Actuarial Vignettes in R
FAwR
FAwR	Functions and Datasets for "Forest Analytics with R".
fBasics	Rmetrics - Markets and Basic Statistics
fbati	Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
FBFsearch	Algorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors
FBN	FISH Based Normalization and Copy Number inference of SNP microarray data
fBonds	Bonds and Interest Rate Models
fbRanks	Association Football (Soccer) Ranking via Poisson Regression
fCalendar	Chronological and Calendarical Objects
fCertificates	fCertificates - Basics of Certificates and Structured Products Valuation
fCopulae	Rmetrics - Dependence Structures with Copulas
FD	Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
fda	Functional Data Analysis
fda.usc	Functional Data Analysis and Utilities for Statistical Computing (fda.usc)
fdaMixed	Functional data analysis in a mixed model framework
fdasrvf	Elastic Functional Data Analysis
fdim	Functions for calculating fractal dimension.
fdrci	Permutation-based FDR Point and Confidence Interval Estimation
fdrtool	Estimation of (Local) False Discovery Rates and Higher Criticism
fds	Functional data sets
fdth	Frequency Distribution Tables, Histograms and Poligons
FeaLect	Scores features for Feature seLection
feature	Feature significance for multivariate kernel density estimation
features	Feature Extraction for Discretely-Sampled Functional Data
fechner	Fechnerian Scaling of Discrete Object Sets
fEcofin	Economic and Financial Data Sets
femmeR	Output analysis of FEMME model results
FEST	Identification of Family Relations using linked markers
fExoticOptions	Exotic Option Valuation
fExtremes	Rmetrics - Extreme Financial Market Data
ff	memory-efficient storage of large data on disk and fast access functions
ffbase	Basic statistical functions for package ff
FFD	Freedom From Disease
ffmanova	Fifty-fifty MANOVA
fftw	Fast FFT and DCT based on FFTW
fftwtools	fftwtools
fgac	Generalized Archimedean Copula
fGarch	Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
FGN	Fractional Gaussian Noise and hyperbolic decay time series model fitting
fgof	Fast Goodness-of-fit Test
fgui	Function GUI
FHtest	Tests for right and interval-censored survival data based on the Fleming-Harrington class
FI	Provide functions for forest inventory calculations
FIAR	Functional Integration Analysis in R
fields	Tools for spatial data
FieldSim	Random fields simulations
filehash	Simple key-value database
filehashSQLite	Simple key-value database using SQLite
filterviewR	Get started easily with FilterView from R.
fImport	Rmetrics - Economic and Financial Data Import
financial	Solving financial problems in R
FinancialInstrument	Financial Instrument Model Infrastructure for R
FinAsym	Classifies implicit trading activity from market quotes and computes the probability of informed trading
FindAllRoots	Find all root(s) of the equation and Find root(s) of the equation by dichotomy
FindIt	R Package for Finding Heterogeneous Treatment Effects
finebalance	Approximate fine balance when exact fine balance is not achievable
fingerprint	Functions to operate on binary fingerprint data
FinTS	Companion to Tsay (2005) Analysis of Financial Time Series
FisherEM	The Fisher-EM algorithm
fisheyeR	Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
fishmethods	Fisheries Methods and Models in R
fishmove	Prediction of Fish Movement Parameters
fit.models	fit.models
fit4NM	NONMEM platform
FitAR	Subset AR Model Fitting
FitARMA	FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
fitdistrplus	Help to fit of a parametric distribution to non-censored or censored data
fitDRC	Fitting Density Ratio Classes
FITSio	FITS (Flexible Image Transport System) utilities
FKBL	fuzzy knowledge base learning
FKF	Fast Kalman Filter
flare	Family of Lasso Regression
flashClust	Implementation of optimal hierarchical clustering
FLCore
FLEDA
flexclust	Flexible Cluster Algorithms
flexCrossHaz	Flexible crossing hazards in the Cox model
flexmix	Flexible Mixture Modeling
FlexParamCurve	Tools to Fit Flexible Parametric Curves
flexsurv	Flexible parametric survival models
flip	Multivariate Permutation Tests
FLLat	Fused Lasso Latent Feature Model
flsa	Path algorithm for the general Fused Lasso Signal Approximator
flubase	Baseline of mortality free of influenza epidemics
FluOMatic	Estimation of background-subtracted fluorescence data
Flury	Data Sets from Flury, 1997
flux	Flux rate calculation from dynamic closed chamber measurements
fma	Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998)
FME	A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis.
fmri	Analysis of fMRI experiments
fmsb	Functions for medical statistics book with some demographic data
FMStable	Finite Moment Stable Distributions
fmt	Variance estimation of FMT method (Fully Moderated t-statistic)
fMultivar	Multivariate Market Analysis
FNN	Fast Nearest Neighbor Search Algorithms and Applications
fNonlinear	Nonlinear and Chaotic Time Series Modelling
foba	greedy variable selection
fontcm	Computer Modern font for use with extrafont package
foodweb	visualisation and analysis of food web networks
fOptions	Basics of Option Valuation
forams	Foraminifera and Community Ecology Analyses
foreach	Foreach looping construct for R
ForeCA	ForeCA - Forecastable Component Analysis
forecast	Forecasting functions for time series and linear models
forecasting
foreign	Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ...
forensic	Statistical Methods in Forensic Genetics
forensim	Statistical tools for the interpretation of forensic DNA mixtures
ForImp	Imputation of missing values through a forward imputation algorithm
fork	R functions for handling multiple processes.
FormalSeries	Elementary arithemtic in formal series rings
formatR	Format R Code Automatically
Formula	Extended Model Formulas
formula.tools	Utilities for working with formulas, expressions, calls and other R objects
FortranCallsR
fortunes	R Fortunes
forward	Forward search
fossil	Palaeoecological and Palaeogeographical Analysis Tools
FourierDescriptors	Generate images using Fourier descriptors.
FourScores	FourScores - A game for two players
fpc	Flexible procedures for clustering
fpca	Restricted MLE for Functional Principal Components Analysis
fPortfolio	Rmetrics - Portfolio Selection and Optimization - ebook available at www.rmetrics.org
fpow	Computing the noncentrality parameter of the noncentral F distribution
fpp	Data for "Forecasting: principles and practice"
fptdApprox	Approximation of first-passage-time densities for diffusion processes.
fracdiff	Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
fracprolif	Fraction Proliferation via a quiescent growth model
FracSim	Simulation of L
fractal	Fractal Time Series Modeling and Analysis
fractaldim	Estimation of fractal dimensions
fractalrock	Generate fractal time series with non-normal returns distribution
FRACTION	Numeric number into fraction
frailtyHL	Frailty Models via H-likelihood
frailtypack	General Frailty models: shared, joint and nested frailty models with prediction
FRAPO	Financial Risk Modelling and Portfolio Optimisation with R
FRB	Fast and Robust Bootstrap
FRBData	Download interest rate data from FRB's website
frbf	Implementation of the "Flexible kernels for RBF network" algorithm
frbs	Fuzzy Rule-based Systems for Classification and Regression Tasks
FRCC	Fast Regularized Canonical Correlation Analysis
freeknotsplines	Free-Knot Splines
fRegression	Regression Based Decision and Prediction
freqMAP	Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
FrF2	Fractional Factorial designs with 2-level factors
FrF2.catlg128	Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
frmqa	The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
frontier	Stochastic Frontier Analysis
frontiles	Partial frontier efficiency analysis
frt	Full Randomization Test
FSelector	Selecting attributes
fSeries	Financial Time Series Objects
fso	Fuzzy Set Ordination
FTICRMS	Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
ftnonpar	Features and Strings for Nonparametric Regression
fTrading	Technical Trading Analysis
fts	R interface to tslib (a time series library in c++)
ftsa	Functional time series analysis
fugeR	FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic.
fume
fun	Use R for Fun
FunCluster	Functional Profiling of Microarray Expression Data
FuncMap	Hive Plots of R Package Function Calls
functional	Curry, Compose, and other higher-order functions
FunctSNP	FunctSNP - SNP annotation data methods and species specific database builder
fUnitRoots	Trends and Unit Roots
FunNet	Integrative Functional Analysis of Transcriptional Networks
futile	Futile base package
futile.any	Futile library to provide some polymorphic operations
futile.logger	Futile logger subsystem
futile.matrix	Futile matrix utilities
futile.options	Futile options management
futile.paradigm	A framework for working in a functional programming paradigm in R
fUtilities	Function Utilities
fuzzyFDR	Exact calculation of fuzzy decision rules for multiple testing
FuzzyNumbers	Tools to deal with fuzzy numbers in R
fuzzyOP	Fuzzy numbers and the main mathematical operations
fuzzyRankTests	Fuzzy Rank Tests and Confidence Intervals
FuzzyStatProb	Fuzzy stationary probabilities from a sequence of observations of an unknown Markov chain
FuzzyToolkitUoN	Type 1 Fuzzy Logic Toolkit
fwdmsa	Forward search for Mokken scale analysis
FWDselect	Selecting variables in regression models
fwi.fbp	Fire Weather Index System and Fire Behaviour Prediction System Calculations
fwsim
fxregime	Exchange Rate Regime Analysis
g.data	Delayed-Data Packages
G.S.	Uses Grieg-Smith method on 2 dimentional spatial data
G1DBN	A package performing Dynamic Bayesian Network inference.
G2Sd	Grain-size Statistics and Description of Sediment
GA	Genetic Algorithms
GA4Stratification	A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
GAD	GAD: Analysis of variance from general principles
gafit	Genetic Algorithm for Curve Fitting
gains	Gains Table Package
GAIPE	Graphical Extension with Accuracy in Parameter Estimation (GAIPE)
galts	Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
gam	Generalized Additive Models
gamair	Data for "GAMs: An Introduction with R"
GAMBoost	Generalized linear and additive models by likelihood based boosting
gamboostLSS	Boosting Methods for GAMLSS Models
gamclass	Functions and data for a course on modern regression and classification
GAMens	Applies GAMbag, GAMrsm and GAMens ensemble classifiers for binary classification
games	Statistical Estimation of Game-Theoretic Models
gamesNws	Playing games using a NWS Server
gamlr	Gamma Lasso Regression
gamlss	Generalized Additive Models for Location Scale and Shape.
gamlss.add	GAMLSS Additive.
gamlss.cens	Fitting an interval response variable using gamlss.family distributions
gamlss.data	GAMLSS Data.
gamlss.demo	Demos for GAMLSS
gamlss.dist	Distributions to be used for GAMLSS modelling.
gamlss.mx	A GAMLSS add on package for fitting mixture distributions
gamlss.nl	Fitting non linear parametric GAMLSS models
gamlss.tr	Generating and fitting truncated (gamlss.family) distributions
gamlss.util	GAMLSS Utilities.
gamm4	Generalized additive mixed models using mgcv and lme4
gammSlice	Generalized additive mixed model analysis via slice sampling
GANPA	Gene Association Network-based Pathway Analysis
GANPAdata	The GANPA Datasets Package
gaoptim	Genetic Algorithm optimization for real-based and permutation-based problems
gap	Genetic analysis package
gaussDiff	Difference measures for multivariate Gaussian probability density functions
gausspred	Bayesian Classification with High-dimensional Gaussian Profiles
gaussquad	Collection of functions for Gaussian quadrature
gb	Generalize Lambda Distribution and Generalized Bootstrapping
GB2	Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation.
gbev	Gradient Boosted Regression Trees with Errors-in-Variables
gbm	Generalized Boosted Regression Models
gbRd	Utilities for processing Rd objects and files
gbs	Package for Generalized Birnbaum-Saunders Distributions
gcbd	GPU/CPU Benchmarking in Debian-based systems
gcdnet	A generalized coordinate descent (GCD) algorithm for computing the solution path of the hybrid Huberized support vector machine (HHSVM) and its generalization.
gcExplorer	Graphical Cluster Explorer
gcl	Compute a fuzzy rules or tree classifier from data
gclus	Clustering Graphics
gcmr	Gaussian Copula Marginal Regression
gcmrec	General class of models for recurrent event data
gcolor	Provides an Inequation Algorithm Function and a solution to import DIMACS files.
gcookbook	Data for "R Graphics Cookbook"
gdata	Various R programming tools for data manipulation
GDD	GD device for creating bitmap graphics as jpeg, png or gif files using gd library
gdimap	Generalized Diffusion Magnetic Resonance Imaging
gdistance	distances and routes on geographical grids
gdor	Generic Directions of Recession
gdsfmt	CoreArray Genomic Data Structure (GDS) R Interface
gearman	R interface to the Gearman Job Server
gee	Generalized Estimation Equation solver
geeM	Fit Generalized Estimating Equations
geepack	Generalized Estimating Equation Package
geigen	Calculate generalized eigenvalues of a matrix pair
geiger	Analysis of evolutionary diversification
gems	Generalized multistate simulation model
gemtc	GeMTC network meta-analysis
gemtc.jar	GeMTC Java binary
GenABEL	genome-wide SNP association analysis
genalg	R Based Genetic Algorithm
gene2pathway	Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures
GENEAread	Package For Reading Binary files
geneARMA	Simulate, model, and display data from a time-course microarray experiment with periodic gene expression
Geneclust	Simulation and analysis of spatial structure of population genetics data
GeneCycle	Identification of Periodically Expressed Genes
GeneF	Package for Generalized F-statistics
genefu	Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.
Geneland	Detection of structure from multilocus genetic data.
geneListPie	Profiling a gene list into GOslim or KEGG function pie
GeneNet	Modeling and Inferring Gene Networks
GeneNT	Relevance or Dependency network and signaling pathway discovery
genepi	Genetic Epidemiology Design and Inference
GeneralizedHyperbolic	The Generalized Hyperbolic Distribution
GeneReg	Construct time delay gene regulatory network
geneSignatureFinder	A Gene-signatures finder tools
genetics	Population Genetics
GeneticTools	Collection of Genetic Data Analysis Tools.
GeneTS	Microarray Time Series and Network Analysis
GenKern	Functions for generating and manipulating binned kernel density estimates
genlasso	Path algorithm for generalized lasso problems
genMOSS	An implementation of the MOSS algorithm for the analysis of GWAS data
genomatic	Manages microsatellite projects. Creates 96-well maps, genotyping submission forms, rerun management, and import into statistical software.
genomicper	Circular Genomic Permutation using GWAS p-values of association
genoPlotR	Plot publication-grade gene and genome maps
GenOrd	Simulation of ordinal and discrete variables with given correlation matrix and marginal distributions
genridge	Generalized ridge trace plots for ridge regression
GenSA	R functions for Generalized Simulated Annealing
gensemble	generalized ensemble methods
genSurv	Generating multi-state survival data
geofd	Spatial prediction for function value data
GeoLight	Analysis of light based geolocator data
GEOmap	Topographic and Geologic Mapping
geomapdata	Data for topographic and Geologic Mapping
geometry	Mesh generation and surface tesselation
geomorph	Geometric morphometric analysis of 2d/3d landmark data
geonames	Interface to www.geonames.org web service
geophys	Geophysics, Continuum Mechanics, Mogi Model
geoPlot	Geocodes street or ip addresses and plots them on a map.
geoR	Analysis of geostatistical data
geoRglm	geoRglm - a package for generalised linear spatial models
geoscale	Geological timescale plot
geospacom	Helper package to facilitate the generation of distance matrices used in the package spacom.
geosphere	Spherical Trigonometry
geospt	Spatial geostatistics; some geostatistical and radial basis functions, prediction and cross validation; design of optimal spatial sampling networks based on geostatistical modelling
geotools
geotopbricks	geotopbricks: Analyzes raster maps as input/output files from the Hydrological Distributed Model GEOtop
GeoXp	Interactive exploratory spatial data analysis
geozoo	Zoo of Geometric Objects
GESTr	Gene Expression State Transformation
getopt	C-like getopt behavior.
GetR	GetR: Calculate Guttman error trees in R
GEVcdn	GEV conditional density estimation network
GExMap	A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data.
GFMaps	Visualization technique for interpretation of high-throughput genetic or proteomic experiments.
GGally	Extension to ggplot2.
ggcolpairs	Combination of GGplot2 plots into a matrix based on data columns.
ggdendro	Tools for extracting dendrogram and tree diagram plot data for use with ggplot.
GGEBiplotGUI	GGEBiplotGUI: Interactive GGE Biplots in R
gglasso	Group Lasso Penalized Learning Using A Unified BMD Algorithm
ggm	A package for Graphical Markov Models
ggmap	A package for spatial visualization with Google Maps and OpenStreetMap
ggmcmc	Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference.
GGMselect	Gaussian Graphs Models selection
ggparallel	Variations of Parallel Coordinate Plots for Categorical Data
ggplot	An implementation of the Grammar of Graphics in R
ggplot2	An implementation of the Grammar of Graphics
ggsubplot	Explore complex data by embedding subplots within plots.
ggthemes	Extra themes, scales and geoms for ggplot
GhcnDaily	Downloads and processes GHCN daily
ghyp	A package on the generalized hyperbolic distribution and its special cases
gibbs.met	Naive Gibbs Sampling with Metropolis Steps
GibbsACOV	Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
GillespieSSA	Gillespie's Stochastic Simulation Algorithm (SSA)
gIPFrm	Generalized Iterative Proportional Fitting for Relational Models
giRaph	The giRaph package for graph representation in R
GISTools	Some further GIS capabilities for R
Giza	Constructing panels of population pyramid plots based on lattice
glasso	Graphical lasso- estimation of Gaussian graphical models
glassomix	High dimensional Sparse Gaussian Graphical Mixture Model
gld	Estimation and use of the generalised (Tukey) lambda distribution
GLDEX	Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
gldist	An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
gllm	Generalised log-linear model
glm2	Fitting Generalized Linear Models
glmc	Fitting Generalized Linear Models Subject to Constraints
glmdm	R Code for Simulation of GLMDM
glmmAK	Generalized Linear Mixed Models
GLMMarp	Generalized Linear Multilevel Model with AR(p) Errors Package
glmmBUGS	Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS
glmmGS	Gauss-Seidel Generalized Linear Mixed Model solver
glmmLasso	Variable selection for generalized linear mixed models by L1-penalized estimation
glmmML	Generalized linear models with clustering
glmnet	Lasso and elastic-net regularized generalized linear models
glmnetcr	Fit a penalized constrained continuation ratio model for predicting an ordinal response
glmpath	L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
glmpathcr	Fit a penalized continuation ratio model for predicting an ordinal response.
glmperm	Inference in Generalized Linear Models
glmulti	Model selection and multimodel inference made easy
globalboosttest	Testing the additional predictive value of high-dimensional data
glogis	Fitting and Testing Generalized Logistic Distributions
glpk	GNU Linear Programming Kit
glpkAPI	R Interface to C API of GLPK
glrt	Generalized Logrank Tests for Interval-censored Failure Time Data
gmaps	Wrapper and auxilliary functions for maps package to work with grid graphics system.
gMCP	Graph Based Multiple Comparison Procedures
GMD	Generalized Minimum Distance of distributions
gmm	Generalized Method of Moments and Generalized Empirical Likelihood
GMMBoost	Likelihood-based Boosting for Generalized mixed models
gmodels	Various R programming tools for model fitting
gmp	Multiple Precision Arithmetic
gmt	Interface between GMT Map-Making Software and R
gmvalid	Validation of graphical models
gMWT	Generalized Mann-Whitney Type Tests
gnm	Generalized Nonlinear Models
gnmf	Generalized Non-negative Matrix Factorization
gnomeGUI	GNOME Console for R
gnumeric	Read data from files readable by gnumeric
goalprog	Weighted and lexicographical goal programming and optimization
gof	Model-diagnostics based on cumulative residuals
GoFKernel	GoFKernel: Testing Goodness-of-fit with the Kernel Density Estimator
GOFSN	Goodness-of-fit tests for the family of skew-normal models
GOGANPA	GO-Functional-Network-based Gene-Set-Analysis
gogarch	Generalized Orthogonal GARCH (GO-GARCH) models
googlebigquery	R client library for communicating with the Google Bigquery service
googlePublicData	An R library to build Google's Public Data Explorer DSPL Metadata files
googleVis	Interface between R and the Google Chart Tools
gooJSON	Google JSON Data Interpreter for R
goric	Generalized Order-Restricted Information Criterion
GOSim	Computation of functional similarities between GO terms and gene products; GO enrichment analysis
GOsummaries	Word cloud summaries of GO enrichment analysis
govdat
gpairs	gpairs: The Generalized Pairs Plot
GPArotation	GPA Factor Rotation
gpclib	General Polygon Clipping Library for R
gPdtest	Bootstrap goodness-of-fit test for the generalized Pareto distribution
GPfit	Gaussian Process Modeling
gplm	Generalized partial linear models (GPLM)
gplots	Various R programming tools for plotting data
gpls	Classification using generalized partial least squares
gppois	Gaussian Processes for Poisson-noised Data
gProfileR	g:ProfileR
GPseq	gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
gptk	Gaussian Processes Tool-Kit
gputools	A few GPU enabled functions
GPvam
grade	Provides functions for matching student-answers to teacher answers for a variety of data types.
GRaF	Species distribution modelling using latent Gaussian random fields
gRain	Graphical Independence Networks
granova	Graphical Analysis of Variance
granovaGG	Graphical Analysis of Variance Using ggplot2
graph	graph: A package to handle graph data structures
graphComp	Visual graph comparison
gRapHD	Efficient selection of undirected graphical models for high-dimensional datasets
GrapheR	A multi-platform GUI for drawing customizable graphs in R
graphicsQC	Quality Control for Graphics in R
graphite	GRAPH Interaction from pathway Topological Environment
grasp	Generalized Regression Analysis and Spatial Prediction for R
GRASS	Interface between GRASS 5.0 geographical information system and R
GrassmannOptim	Grassmann Manifold Optimization
gRbase	A package for graphical modelling in R
gRc	Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
gRcox	Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
gregmisc	Greg's Miscellaneous Functions
Grid2Polygons	Convert Spatial Grids to Polygons
gridBase	Integration of base and grid graphics
gridDebug
gridExtra	functions in Grid graphics
gridGraphviz
GridR	Executes functions on remote hosts, clusters or grids.
gridSVG	Export grid graphics as SVG
GriegSmith	Uses Grieg-Smith method on 2 dimentional spatial data
gRim	Graphical Interaction Models
grImport	Importing Vector Graphics
grnn	General regression neural network
grnnR	A Generalized Regression Neural Network
grofit	The package was developed to fit fit many growth curves obtained under different conditions.
grouped	Regression Analysis of Grouped and Coarse Data
GroupSeq	Performing computations related to group sequential designs.
growcurves	Bayesian semi and nonparametric growth curve models that additionally include multiple membership random effects.
growthrate	Bayesian reconstruction of growth velocity
grplasso	Fitting user specified models with Group Lasso penalty
grpreg	Regularization paths for regression models with grouped covariates
GRRGI	Gauge R and R Confidence Intervals
grt	General Recognition Theory
GSA	Gene set analysis
gsarima	Two functions for Generalized SARIMA time series simulation
gsbDesign	Group Sequential Bayes Design
gsc	Generalised Shape Constraints
gsDesign	Group Sequential Design
gsg	Calculation of selection coefficients
GSIF	Global Soil Information Facilities
gsl	wrapper for the Gnu Scientific Library
GSM	Gamma Shape Mixture
gsmaRt	Gene Set Microarray Testing
gsmoothr	Smoothing tools
gss	General Smoothing Splines
gstat	spatial and spatio-temporal geostatistical modelling, prediction and simulation
gstudio	GeneticStudio packages for R.
gsubfn	Utilities for strings and function arguments.
gtable	Arrange grobs in tables.
gtcorr	Calculate efficiencies of group testing algorithms with correlated responses
gte	Generalized Turnbull's estimator
gtkDevice	Loadable and embeddable gtk device driver for R
gtm	Generative topographic mapping
gtools	Various R programming tools
gtx	Genetics ToolboX
GuardianR	Guardian API Wrapper
Guerry	Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
GUIDE	GUI for DErivatives in R
gumbel	Gumbel copula
GUniFrac	Generalized UniFrac distances
GUTS	GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model
gvcm.cat	Regularized Categorial Effects/Categorial Effect Modifiers/Continuous/Smooth effects in GLMs
gvlma	Global Validation of Linear Models Assumptions
GWAF	Genome-wide association/interaction analyses with family data
GWASExactHW	Exact Hardy-Weinburg testing for Genome Wide Association Studies
GWAtoolbox	GWAS Quality Control
gwerAM	Controlling the genome-wide type I error rate in association mapping experiments
GWG	Calculation of probabilities for inadequate and excessive gestational weight gain
gWidgets	gWidgets API for building toolkit-independent, interactive GUIs
gWidgetsRGtk2	Toolkit implementation of gWidgets for RGtk2
gWidgetsrJava	Toolkit implementation of gWidgets for rJava
gWidgetstcltk	Toolkit implementation of gWidgets for tcltk package
gWidgetsWWW	Toolkit implementation of the gWidgets API for use with web pages
GWRM	GWRM
gwrr	Geographically weighted regression with penalties and diagnostic tools
h5r	Interface to HDF5 Files
haarfisz	Software to perform Haar Fisz transforms
HAC	Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC)
hacks	Convenient R Functions
HadoopStreaming	Utilities for using R scripts in Hadoop streaming
halp	Show certain type of comments from function bodies as "live-help"
HandTill2001	Multiple Class Area under ROC Curve
HAP.ROR	Recursive Organizer (ROR)
hapassoc	Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
HapEstXXR	HapEstXXR
HAPim	HapIM
Haplin	Analyzing case-parent triad and/or case-control data with SNP haplotypes
haplo.ccs	Estimate Haplotype Relative Risks in Case-Control Data
haplo.stats	Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
HaploSim	HaploSim
hapsim	Haplotype Data Simulation
HardyWeinberg	Graphical tests for Hardy-Weinberg equilibrium
harvestr	A Parallel Simulation Framework
hash	Full feature implementation of hash/associated arrays/dictionaries
hashFunction	A collection of non-cryptographic hash functions
hbim	Hill/Bliss Independence Model for Combination Vaccines
hbmem	Hierarchical Bayesian Analysis of Recognition Memory
hbsae	Hierarchical Bayesian Small Area Estimation
hcc	Hidden correlation check
hda	Heteroscedastic Discriminant Analysis
HDclassif	High Dimensional Supervised Classification and Clustering
hddplot	Use known groups in high-dimensional data to derive scores for plots
hdeco	Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
hdf5	HDF5
hdlm	Fitting High Dimensional Linear Models
HDMD	Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
hdrcde	Highest density regions and conditional density estimation
heatex	Heat exchange calculations during physical activity.
heatmap.plus	Heatmap with more sensible behavior.
heatmapFit	Heatmap Fit Statistic For Binary Dependent Variable Models
heavy	Package for outliers accommodation using heavy-tailed distributions
helloJavaWorld	Hello Java World
helpr	Help for R.
heplots	Visualizing Hypothesis Tests in Multivariate Linear Models
hergm	Hierarchical Exponential-Family Random Graph Models with Local Dependence
het.test	White's Test for Heteroskedasticity
hett	Heteroscedastic t-regression
hexbin	Hexagonal Binning Routines
hexView	Viewing Binary Files
HFWutils	csv import, csv export, garbage collection,string matching and passing by reference
hgam	High-dimensional Additive Modelling
hglm	Hierarchical Generalized Linear Models
HGLMMM	Hierarchical Generalized Linear Models
HGNChelper	Handy functions for working with HGNC gene symbols and Affymetrix probeset identifiers.
HH	Statistical Analysis and Data Display: Heiberger and Holland
hht	The Hilbert-Huang Transform: Tools and Methods
HI	Simulation from distributions supported by nested hyperplanes
HIBAG	HIBAG -- HLA Genotype Imputation with Attribute Bagging
HiddenMarkov	Hidden Markov Models
HiDimDA	High Dimensional Discriminant Analysis
hier.part	Hierarchical Partitioning
hierarchicalDS	Functions for performing hierarchical analysis of distance sampling data
hierfstat	Estimation and tests of hierarchical F-statistics
hierNet	A Lasso for Hierarchical Interactions
HIest	Hybrid index estimation
highfrequency	highfrequency
highlight	Syntax highlighter
HighProbability	HighProbability estimates which alternative hypotheses have frequentist or Bayesian probabilities at least as great as a specified threshold, given a list of p-values.
highriskzone	Determining and evaluating high-risk zones
hints	Provide hints on what to do next
HiPLARM	High Performance Linear Algebra in R
hiPOD	hierarchical Pooled Optimal Design
hisemi	Hierarchical Semiparametric Regression of Test Statistics
HistData	Data sets from the history of statistics and data visualization
histogram	Construction of regular and irregular histograms with different options for automatic choice of bins
hitandrun	"Hit and Run" method for sampling uniformly form convex shapes.
hive	Hadoop InteractiVE
HiveR	2D and 3D Hive Plots for R
HLMdiag	Diagnostic tools for hierarchical (multilevel) linear models
hlr	Hidden Logistic Regression
hmeasure	The H-measure and other scalar classification performance metrics
Hmisc	Harrell Miscellaneous
HMM	HMM - Hidden Markov Models
hmm.discnp	Hidden Markov models with discrete non-parametric observation distributions.
hmmm	hierarchical multinomial marginal models
HMMmix	The HMMmixture package
HMP	Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
HMPTrees	Statistical Object Oriented Data Analysis of RDP-based Taxonomic trees from Human Microbiome Data: Modeling, Visualization, and Two-Group Comparison
HMR	Flux estimation with static chamber data
hoa
hof	More higher order functions for R.
holdem	Texas Holdem simulator
Holidays	Holiday and halfday data, for use with the TimeWarp package
homals	Gifi Methods for Optimal Scaling
homeR	Functions useful for building physics
homtest	Homogeneity tests for Regional Frequency Analysis
hopach	Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
hot	Computation on micro-arrays
Hotelling	Hotelling's T-squared test and variants
hotspots	Hot spots
howmany	A lower bound for the number of correct rejections
HPbayes	Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
HPO.db	A set of annotation maps describing the Human Phenotype Ontology
HPOSim	Analysis similarities between HPO terms and phenotypic similarity between genes and between diseases.
HSAUR	A Handbook of Statistical Analyses Using R
HSAUR2	A Handbook of Statistical Analyses Using R (2nd Edition)
hSDM	hierarchical Bayesian species distribution models
hsicCCA	Canonical Correlation Analysis based on Kernel Independence Measures
hsmm	Hidden Semi Markov Models
HSROC	Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
HTMLapplets	Dynamic visualisation in HTML documents
HTMLUtils	Facilitates automated HTML report creation
hts	Hierarchical and grouped time series
HTSCluster	Clustering high throughput sequencing (HTS) data
httpRequest	Basic HTTP Request
httpuv	HTTP and WebSocket server library
httr	Tools for working with URLs and HTTP
huge	High-dimensional Undirected Graph Estimation
HumMeth27QCReport	HumMeth27QCReport: quality control and preprocessing of Illumina's Infinium methylation assays.
HW.pval	Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
hwde	Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci.
HWEBayes	Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing.
HWEintrinsic	Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
hwriter	HTML Writer - Outputs R objects in HTML format
hwriterPlus	hwriterPlus: Extending the hwriter Package
hybridHclust	Hybrid hierarchical clustering
HybridMC	Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
hydrogeo	Groundwater data presentation and interpretation.
hydroGOF	Goodness-of-fit functions for comparison of simulated and observed hydrological time series
HydroMe	R codes for estimating water retention and infiltration model parameters using experimental data
hydroPSO	Particle Swarm Optimisation, with focus on Environmental Models
hydrosanity	Graphical user interface for exploring hydrological time series
hydroTSM	Time series management, analysis and interpolation for hydrological modelling
HyperbolicDist	The hyperbolic distribution
hyperdirichlet	A generalization of the Dirichlet distribution
hypergeo	The hypergeometric function
hyperSpec	Interface for hyperspectral data, i.e. spectra + meta info (spatial, time, concentration, ...)
HyPhy	Macroevolutionary phylogentic analysis of species trees and gene trees
hypothesestest	Confidence Intervals and Tests of Statistical Hypotheses
hypred	Simulation of genomic data in applied genetics
hzar	Hybrid Zone Analysis using R
ibd	INCOMPLETE BLOCK DESIGNS
IBDhaploRtools	Functions for the Analysis of IBD Haplo output
ibdreg	Regression Methods for IBD Linkage With Covariates
IBDsim	Simulation of chromosomal regions shared by family members.
IBHM	Approximation using the IBHM method
Iboot	Iboot: iterated bootstrap tests and confidence sets.
ibr	Iterative Bias Reduction
IBrokers	R API to Interactive Brokers Trader Workstation
iBUGS	An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
ic.infer	Inequality constrained inference in linear normal situations
IC2	Inequality and Concentration Indices and Curves
ic50	Standardized high-throughput evaluation of cell-based compound screens
icaOcularCorrection	Independent Components Analysis (ICA) based eye-movement correction.
ICC	Functions facilitating the estimation of the Intraclass Correlation Coefficient
ICE	Iterated Conditional Expectation
ICEinfer	Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
Icens	NPMLE for Censored and Truncated Data
icensmis	Study Design and Data Analysis in the presence of error-prone diagnostic tests and self-reported outcomes
iCluster	Integrative clustering of multiple genomic data types
iCluster
icomp	ICOMP criterion
ICS	Tools for Exploring Multivariate Data via ICS/ICA
ICSNP	Tools for Multivariate Nonparametrics
idbg
iDEMO	integrated degradation models
identity	Jacquard Condensed Coefficients of Identity
IDPmisc	Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
idr	Irreproducible discovery rate
ieeeround	Functions to set and get the IEEE rounding mode
ifa	Independent Factor Analysis
iFad	An integrative factor analysis model for drug-pathway association inference
IFP	Identifying functional polymorphisms in genetic association studies
ifs	Iterated Function Systems
ifultools	Insightful Research Tools
ig	Package for a General Class of Inverse Gaussian Distributions
iGasso	Genetic association tests and utilities
iGenomicViewer	Tool for sending interactive bioinformatic heatmaps with tool-tip content.
IgorR
igraph	Network analysis and visualization
igraph0	Network analysis and visualization, old, deprecated package.
igraphdata	A collection of network data sets for the igraph package
igraphtosonia	Convert iGraph graps to SoNIA .son files
iid.test	iid-test
IM	Orthogonal Moment Analysis
ImageMetrics	Facilitates image analysis for social scientists.
Imap	Interactive Mapping
imguR	Share plots using the imgur.com image hosting service
IMIS	Increamental Mixture Importance Sampling
ImpactIV	Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
imprProbEst	Minimum distance estimation in an imprecise probability model
imputation	imputation
impute	impute: Imputation for microarray data
imputeMDR	The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
imputeYn	Imputing the last largest censored observation/observations under weighted least squares
IndependenceTests	Nonparametric tests of independence between random vectors.
indicspecies	Studying the statistical relationship between species and groups of sites
ineq	Measuring Inequality, Concentration, and Poverty
inetwork	Network Analysis and Plotting
InfDim	Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories.
inference	Functions to extract inferential values of a fitted model object
inflection	Finds the inflection point of a curve
influence.ME	Tools for detecting influential data in mixed effects models
infochimps	An R wrapper for the infochimps.com API services
infoDecompuTE	Information Decomposition of Two-phase Experiments
informR	R Tools for Creating Sequence Statistics
infotheo	Information-Theoretic Measures
infutil	Information Utility
IniStatR
inline	Inline C, C++, Fortran function calls from R
inlinedocs	Convert inline comments to documentation
insideRODE	insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes.
insideRODE
insol	Solar Radiation
installr	Functions for updating and installing a new version of R and other software - from R
int64	64 bit integer types
intamap	procedures for automated interpolation
intamapInteractive	procedures for automated interpolation - methods only to be used interactively, not included in intamap package
intcox	Iterated Convex Minorant Algorithm for interval censored event data
integrativeME	integrative mixture of experts
integrativeMEdata	Matched Clinical factors and microarray data (part of integrativeME package)
integrOmics	end of integrOmics package
Interact	Tests for marginal interactions in a 2 class response model
InteractiveIGraph	interactive network analysis and visualization.
interactivity	toggle R interactive mode.
intergraph	Coercion routines for network data objects in R
Interpol	Interpolation of amino acid sequences
Interpol.T
interval	Weighted Logrank Tests and NPMLE for interval censored data
intervals	Tools for working with points and intervals
intpoint	linear programming solver by the interior point method and graphically (two dimensions)
intReg
intRegGOF	Integrated Regression Goodness of Fit
introgress	methods for analyzing introgression between divergent lineages
intsvy	International Assessment Data Manager
ipdmeta	Tools for subgroup analyses with multiple trial data using aggregate statistics
iplots	iPlots - interactive graphics for R
IPMpack	Builds and analyses Integral Projection Models (IPMs).
ipptoolbox	IPP Toolbox
ipred	Improved Predictors
IPSUR	Introduction to Probability and Statistics Using R
ipw	Estimate inverse probability weights.
IQCC	Improved Quality Control Charts
IQMNMR	Identification and Quantification of Metabolites by Using 1D 1H NMR FID
irace
iRefR	iRefIndex Manager
iRegression	Regression methods for interval-valued variables
irlba	Fast partial SVD by implicitly-restarted Lanczos bidiagonalization
irr	Various Coefficients of Interrater Reliability and Agreement
irtoys	Simple interface to the estimation and plotting of IRT models
irtProb	Utilities and Probability Distributions Related to Multidimensional Person Item Response Models (IRT)
irtrees	Estimation of Tree-Based Item Response Models
ISA	INTRODUZIONE ALLA STATISTICA APPLICATA con esempi in R
isa2	The Iterative Signature Algorithm
ISBF	Iterative Selection of Blocks of Features - ISBF
ISDA.R	interval symbolic data analysis for R
isdals	Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
ISIPTA	ISIPTA network analysis
ismev	An Introduction to Statistical Modeling of Extreme Values
Iso	Functions to perform isotonic regression.
isocir	Isotonic Inference for Circular data
ISOcodes	Selected ISO codes
IsoGene	Testing for monotonic relationship between gene expression and doses in a microarray experiment.
isopam	Isopam (Clustering)
isopat	Calculation of isotopic pattern for a given molecular formula
isotone	Active set and generalized PAVA for isotone optimization
IsotopeR	Stable isotope analysis
ISOweek	Week of the year and weekday according to ISO 8601
iSubpathwayMiner	The package can implement the graph-based reconstruction and analyses of the KEGG pathways.
isva	Independent Surrogate Variable Analysis
ISwR	Introductory Statistics with R
iteRates	Parametric rate comparison
iterators	Iterator construct for R
iterLap	Approximate probability densities by iterated Laplace Approximations
itertools	Iterator Tools
its	Irregular Time Series
itsmr	Time series analysis package for students
iv	Information Visualisation with UML and Graphs
ivbma	Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
ivivc	A data analysis tool for in vitro-in vivo correlation (IVIVC)
iWebPlots	Interactive web-based plots
iWeigReg	Improved methods for causal inference and missing data problems
iwtp	Numerical evaluation willingness to pay based on interval data
jaatha	A Fast Parameter Estimation Method for Evolutionary Biology
jackknifeKME	Jackknife estimates of Kaplan-Meier estimators or integrals.
JADE	JADE and other BSS methods as well as some BSS performance criteria
JASPAR	R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices.
JavaGD	Java Graphics Device
JGL	Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
JGR	JGR - Java GUI for R
jit	Just-in-time compiler for the R language
JJcorr	Calculates polychorical correlations for several copula families.
JLLprod	Nonparametric Estimation of Homothetic and Generalized Homothetic Production Functions
JM	Joint Modeling of Longitudinal and Survival Data
JMbayes	Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
jmec	Fit joint model for event and censoring with cluster-level frailties
Jmisc	Julian Miscellaneous Function
JMLSD	Joint Modeling of Longitudinal and Survival Data - Power Calculation
Johnson	Johnson Transformation
JohnsonDistribution	Johnson Distribution
joineR	Joint modelling of repeated measurements and time-to-event data
jointDiag	Joint Approximate Diagonalization of a set of square matrices
JointGLM	Joint Modelling of Mean and Dispersion (outdated, see package JointModeling)
JointModeling	Joint Modelling of Mean and Dispersion
JOP	Joint Optimization Plot
JoSAE	Functions for unit-level small area estimators and their variances
jpeg	Read and write JPEG images
JPSurv	Methods for population-based cancer survival analysis
JudgeIt	JudgeIt
Julia	Fractal Image Data Generator
KappaGUI	GUI for Cohen's and Fleiss' Kappa
kappalab	Non-additive measure and integral manipulation functions
kappaSize	Sample Size Estimation Functions for Studies of Interobserver Agreement
KappaV	Calculates "vectorial Kappa", an index of congruence between patchy mosaics.
kaps	K Adaptive Partitioning for Survival data
kBestShortestPaths	kbest: Finds K best paths in a given graph.
kdetrees	Nonparametric method for identifying discordant trees
kelvin	Calculate solutions to Kelvin differential equation using Bessel functions.
Kendall	Kendall rank correlation and Mann-Kendall trend test
kequate	The kernel method of test equating
kerdiest	Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions.
kerfdr	semi-parametric kernel-based approach to local fdr estimations
kernelFactory	Kernel Factory: An ensemble of kernel Machines
kernelPop	Spatially explicit population genetic simulations
kernlab	Kernel-based Machine Learning Lab
KernSmooth	Functions for kernel smoothing for Wand & Jones (1995)
KernSmoothIRT	Nonparametric Item Response Theory
KFAS	Kalman Filter and Smoother for Exponential Family State Space Models.
kin.cohort	Analysis of kin-cohort studies
kinfit	Routines for fitting kinetic models to chemical degradation data
kinship	mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees
kinship2	Pedigree functions
kitagawa	Model the spectral response of a closed water-well to harmonic strains at seismic frequencies.
kknn	Weighted k-Nearest Neighbors
klaR	Classification and visualization
klausuR	Multiple Choice Test Evaluation
klin	Linear equations with Kronecker structure
km.ci	Confidence intervals for the Kaplan-Meier estimator
kmi	Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
Kmisc	Miscellaneous functions intended to improve the R coding experience
kml	K-means for Longitudinal data
kml3d	K-means for joint Longitudinal data
KMsurv	Data sets from Klein and Moeschberger (1997), Survival Analysis
knitcitations	Citations for knitr markdown files
knitr
knn	knn-gcv
knncat	Nearest-neighbor classification with categorical variables
knnFinder	Fast Near Neighbour Search
knnflex	A more flexible KNN
knnGarden	Multi-distance based k-Nearest Neighbors
knnTree	k-nn classification with variable selection inside leaves of a tree
knorm	Microarray Data From Multiple Biologically Interrelated Experiments
kobe	Tools for providing advice for the Tuna Regional Fisheries Management Organisations
kohonen	Supervised and unsupervised self-organising maps
kolmim	An improved evaluation of Kolmogorov's distribution
KoNLP	Korean NLP Package
koRpus	An R Package for Text Analysis
Kpart	Spline Fitting
kriging	Ordinary Kriging
KrigInv	Kriging-based Inversion for Deterministic and Noisy Computer Experiments
KRLS	Kernel-based Regularized Least Squares (KRLS)
ks	Kernel smoothing
kSamples	K-Sample Rank Tests and their Combinations
KsPlot	Check the power of seveal statistical models.
kst	Knowledge Space Theory
ktspair	k-Top Scoring Pairs for Microarray Classification
kulife	Datasets and functions from the Faculty of Life Sciences, University of Copenhagen
kza	Kolmogorov-Zurbenko Adaptive Filters
kzft	Kolmogorov-Zurbenko Fourier Transform and Applications
kzs	Kolmogorov-Zurbenko Spatial Smoothing and Applications
labdsv	Ordination and Multivariate Analysis for Ecology
labeledLoop	Labeled Loop
labeling	Axis Labeling
labeltodendro	Convert labels or tables to a dendrogram
labstatR	Libreria del Laboratorio di Statistica con R
laeken	Estimation of indicators on social exclusion and poverty
laercio	Duncan test, Tukey test and Scott-Knott test.
LaF	Fast access to large ASCII files
lago	An efficient kernel algorithm for rare target detection and unbalanced classification
Lahman	Sean Lahman's Baseball Database
lambda.r	Functional programming in R
Lambda4	Estimation techniques for the reliability estimate: Maximized Lambda4.
LambertW	Analyze and Gaussianize skewed, heavy-tailed data
lancet.iraqmortality	Surveys of Iraq Mortality Published in The Lancet
landsat	Radiometric and topographic correction of satellite imagery
languageR	Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
LaplacesDemon	Complete Environment for Bayesian Inference
LARF	LARF: Local Average Response Functions for Estimating Treatment Effects
LargeRegression	Large Regressions
lars	Least Angle Regression, Lasso and Forward Stagewise
laser	Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
lasso2	L1 constrained estimation aka `lasso'
lassoshooting	L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
last.call	Utility for returning previous commands as unevaluated calls and the full context of function calls.
latdiag	Draws diagrams useful for checking latent scales
latentnet	Latent position and cluster models for statistical networks
latentnetHRT	Latent position and cluster models for statistical networks
Laterality	Laterality
lattice	Lattice Graphics
latticeDensity	Density estimation and nonparametric regression on irregular regions
latticedl	Lattice direct labels
latticeExtra	Extra Graphical Utilities Based on Lattice
LatticeKrig	Multiresolution Kriging based on Markov random fields
latticist	A graphical user interface for exploratory visualisation
lava	Linear Latent Variable Models
lava.tobit	LVM with censored and binary outcomes
lavaan	Latent Variable Analysis
lavaan.survey	Complex survey structural equation modeling (SEM)
lawstat	An R package for biostatistics, public policy, and law
lazy	Lazy Learning for Local Regression
lazyData	A LazyData Facility
lazyWeave	LaTeX Wrappers for R Users
lbiassurv	Length-biased correction to survival curve estimation.
LCAextend	Latent Class Analysis (LCA) with familial dependence in extended pedigrees
lcd	Learn Chain graphs via Decomposition
lcda	Latent Class Discriminant Analysis
LCFdata	Data sets for package ``LMERConvenienceFunctions''
lcmm	Estimation of latent class mixed models, joint latent class mixed models and mixed models for curvilinear outcomes
lcmr	lcmr package
lda	Collapsed Gibbs sampling methods for topic models.
lda.cv	Cross-validation for linear discriminate analysis
ldbounds	Lan-DeMets Method for Group Sequential Boundaries
LDcorSV	LDcorSV
ldDesign	Design of experiments for detection of linkage disequilibrium
LDdiag	Link Function and Distribution Diagnostic Test for Social Science Researchers
LDExplorer	Efficient Whole-Genome LD Based Haplotpe Block Recognition
LDheatmap	Graphical display of pairwise linkage disequilibria between SNPs
ldlasso	LD LASSO Regression for SNP Association Study
LDOD	Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
ldr	Methods for likelihood-based dimension reduction in regression
LDtests	Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
LeafAngle	Fits, plots, and summarizes leaf angle distributions.
LEAPFrOG	Likelihood Estimation of Admixture in Parents From Offspring Genotypes
leapp	latent effect adjustment after primary projection
leaps	regression subset selection
LearnBayes	Functions for Learning Bayesian Inference
LearnEDA	Functions for Learning Exploratory Data Analysis
leiv	Bivariate linear errors-in-variables estimation
LeLogicielR	Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
lemma	Laplace approximated EM Microarray Analysis
lessR	Less Code, More Results
lestat	A package for LEarning STATistics
lfe	Linear Group Fixed Effects
lfstat	Calculates Low Flow Statistics for daily stream flow data
lga	Tools for linear grouping analysis (LGA)
lgcp	Log-Gaussian Cox Process
LGS	simulating Linkage Group Selection (LGS)
lgtdl	A set of methods for longitudinal data objects.
lhs	Latin Hypercube Samples
libamtrack	Computational routines for proton and ion radiotherapy
LiblineaR	Linear Predictive Models Based On The Liblinear C/C++ Library.
LICORS	Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
lifecontingencies	A package to perform actuarial mathematics for life contingencies insurances
LifeTables	A package to implement HMD model life table system
LIHNPSD	Poisson Subordinated Distribution
likelihood
LIM	Linear Inverse Model examples and solution methods.
limitplot	Jitter/CI Plot with Ordered Points Below the Limit of Detection
limSolve	Solving Linear Inverse Models
LinearizedSVR	Linearized Support Vector Regression
lineup	Lining up two sets of measurements
linkcomm	Tools for Generating, Visualizing, and Analysing Link Communities in Networks
linLIR	linear Likelihood-based Imprecise Regression
linprog	Linear Programming / Optimization
lint	Tools to check R code style
liso	Fitting lasso penalised additive isotone models
lisp
lisrelToR	Import output from LISREL into R
list	Statistical Methods for the Item Count Technique and List Experiment
LIStest	Longest Increasing Subsequence Independence Test
ljr	Logistic Joinpoint Regression
LLAhclust	Hierarchical clustering of variables or objects based on the likelihood linkage analysis method
llama	Leveraging Learning to Automatically Manage Algorithms
LLdecomp	Decomposes a set of variables into cliques and separators.
lle	Locally linear embedding
LLN	Learning with latent networks
lmbc	Linear Model Bias Correction for RNA-Seq Data
lme4	Linear mixed-effects models using S4 classes
lmec	Linear Mixed-Effects Models with Censored Responses
lmeNB	Fit negative binomial mixed-effect regression model.
lmeNBBayes	Sample from the posterior of the negative binomial mixed-effect regression model. The random effect is modeled with DP mixture of beta distributions.
LMERConvenienceFunctions	A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions.
lmerTest	Tests for random and fixed effects for linear mixed effect models (lmer objects of lme4 package).
lmeSplines	lmeSplines
LMest	Fit Latent Markov models in basic versions
lmf	Functions for estimation and inference of selection in age-structured populations
LMGene	LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
lmm	Linear mixed models
lmmfit	Goodness-of-fit-measures for linear mixed models with one-level-grouping
lmmlasso	Linear mixed-effects models with Lasso
lmodel2	Model II Regression
lmom	L-moments
lmomco	L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions
Lmoments	L-moments and quantile mixtures
lmomRFA	Regional frequency analysis using L-moments
lmPerm	Permutation tests for linear models
lmSupport	Support for Linear Models
lmtest	Testing Linear Regression Models
LN3GV	LN3GV
lnMLE	Logistic-Normal Model for Clustered Binary (Binomial) Data
localdepth	Local Depth
localgauss	Estimating local Gaussian parameters
locfdr	Computes local false discovery rates
locfit	Local Regression, Likelihood and Density Estimation.
Lock5Data	Datasets for "Statistics: UnLocking the Power of Data"
locpol	Kernel local polynomial regression
lodplot	Plot a genome scan
log10	Decimal log plotting in two and three dimensions
log4r	A simple logging system for R, based on log4j.
LogConcDEAD	Log-concave Density Estimation in Arbitrary Dimensions
logconcens	Maximum likelihood estimation of a log-concave density based on censored data
logcondens	Estimate a Log-Concave Probability Density from iid Observations
logcondiscr	Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations
logging	R logging package
LogicForest	Logic Forest
LogicReg	Logic Regression
logilasso	Analysis of sparse contingency tables with penalization approaches
logistf	Firth's bias reduced logistic regression
logistiX	Exact logistic regression including Firth correction
LogitNet	Infer network based on binary arrays using regularized logistic regression
logitnorm	Functions for the logitnormal distribution.
loglognorm	Double log normal distribution functions
logmult	Log-multiplicative models, including association models
logregperm	Inference in Logistic Regression
logspline	Logspline density estimation routines
lokern	Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
longCatEDA	Package for Plotting Categorical Longitudinal and Time-Series Data
longclust	Model-Based Clustering and Classification for Longitudinal Data
longitudinal	Analysis of Multiple Time Course Data
longitudinalData	Longitudinal Data
longmemo	Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions
longpower	Sample size calculations for longitudinal data
longRPart	Recursive partitioning of longitudinal data using mixed-effects models
loop	loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
LoopAnalyst	A collection of tools to conduct Levins' Loop Analysis
lordif	Logistic Regression Differential Item Functioning using IRT
lorec	LOw Rand and sparsE Covariance matrix estimation
lossDev	Robust Loss Development Using MCMC
LOST	Missing morphometric data simulation and estimation
LowRankQP	Low Rank Quadratic Programming
lpc	Lassoed principal components for testing significance of features
LPCM	Local principal curve methods
lpint	Local polynomial esitmators of intensity function or its derivatives
lpridge	Local Polynomial (Ridge) Regression
lpSolve	Interface to Lp_solve v. 5.5 to solve linear/integer programs
lpSolveAPI	R Interface for lp_solve version 5.5.2.0
lqa	Penalized Likelihood Inference for GLMs
lqmm	Linear Quantile Mixed Models
LS2W	Locally stationary two-dimensional wavelet process estimation scheme
lsa	Latent Semantic Analysis
LSC	Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
LSD	Lots of Superior Depictions
lsmeans	Least-squares means
lspls	LS-PLS Models
lsr	Companion package to "Learning Statistics with R"
lss	the accelerated failure time model to right censored data based on least-squares principle
ltm	Latent Trait Models under IRT
ltmle	Longitudinal Targeted Maximum Likelihood Estimation
LTPDvar	LTPD and AOQL plans for acceptance sampling inspection by variables
LTR	Perform LTR analysis on microarray data
ltsa	Linear time series analysis
lubridate	Make dealing with dates a little easier
luca	Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
Luminescence	Package for Luminescence Dating data analysis
lvplot	Level value plots for R
LVQTools	Learning Vector Quantization Tools
lxb	Fast LXB file reader
M3	Reading M3 files
maanova	Tools for analyzing Micro Array experiments
MAc	Meta-Analysis with Correlations
MAclinical	Class prediction based on microarray data and clinical parameters
MAd	Meta-Analysis with Mean Differences
mada	Meta-Analysis of Diagnostic Accuracy (mada)
MADAM	This package provides some basic methods for meta-analysis
madsim	A Flexible Microarray Data Simulation Model
Maeswrap	Wrapper functions for MAESTRA/MAESPA.
magic	create and investigate magic squares
magicaxis	Pretty scientific plotting with minor-tick and log minor-tick support
magma	Matrix Algebra on GPU and Multicore Architectures
magnets	Simulate micro-magnets dynamics
mail	Sending Email Notifications from R
MAINT.Data	Model and Analize Interval Data
makeProject	Creates an empty package framework for the LCFD format
makeR
makesweave	Literate Programming with Make and Sweave
malaria.em
MALDIquant	Quantitative Analysis of Mass Spectrometry Data
MALDIquantForeign	Import/Export routines for MALDIquant
MAMA	Meta-Analysis of MicroArray
MAMS	Designing Multi-Arm Multi-Stage Studies
MAMSE	Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights.
Mangrove	Risk prediction on trees
mapdata	Extra Map Databases
MapGAM	Mapping Smoothed Odds Ratios from Individual-Level Data
mapLD	Linkage Disequilibrium Mapping
MAPLES	Smoothed age profile estimation
mapplots	Data visualisation on maps
mapproj	Map Projections
mapReduce	mapReduce - flexible mapReduce algorithm for parallel computation
maps	Draw Geographical Maps
maptools	Tools for reading and handling spatial objects
maptree	Mapping, pruning, and graphing tree models
mAr	Multivariate AutoRegressive analysis
MAR1	Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
mar1s	Multiplicative AR(1) with Seasonal Processes
marelac	Tools for Aquatic Sciences
marelacTeaching	Datasets and tutorials for use in aquatic sciences
marg	Approximate marginal inference for regression-scale models
margie	Log Marginal Likelihood of Gaussian Mixture
marginalmodelplots	Marginal Mean Model Plots
marginTree	marginTree: margin trees for high-dimensional classification
margLikArrogance	Marginal Likelihood Computation via Arrogance Sampling
markdown	Markdown rendering for R
marked	R Code for mark-recapture analysis
MarkedPointProcess	Analysis of Marks of Marked Point Processes
markerSearchPower	Power calculation for marker detection strategies in Genome-wide Association Studies
maRketSim	Market simulator for R
marmap	Import, plot and analyze bathymetric and topographic data
marqLevAlg	An algorithm for least-squares curve fitting
MARSS	Multivariate Autoregressive State-Space Modeling
MASS	Support Functions and Datasets for Venables and Ripley's MASS
MASSTIMATE	Body Mass Estimation Equations for Vertebrates
MasterBayes	ML and MCMC Methods for Pedigree Reconstruction and Analysis
MAT	Multidimensional Adaptive Testing (MAT)
Matching	Multivariate and Propensity Score Matching with Balance Optimization
MatchIt	MatchIt
mathgraph	Directed and undirected graphs
maticce	Mapping Transitions in Continuous Character Evolution
matie	Measuring Association and Testing Independence Efficiently
matlab	MATLAB emulation package
Matrix	Sparse and Dense Matrix Classes and Methods
matrixcalc	Collection of functions for matrix calculations
MatrixEQTL	Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
MatrixModels	Modelling with Sparse And Dense Matrices
matrixStats	Methods that apply to rows and columns of a matrix
MATTOOLS	Modern Calibration Functions for the Modern Analog Technique (MAT)
MAVTgsa
MaXact	Exact max-type Cochran-Armitage trend test(CATT)
maxent	Low-memory Multinomial Logistic Regression with Support for Text Classification
maxLik	Maximum Likelihood Estimation
maxlike	Model species distributions by estimating the probability of occurrence using presence-only data.
maxLinear	Conditional Samplings for Max-Linear Models
maxstat	Maximally Selected Rank Statistics
MBA	Multilevel B-spline Approximation
MBCluster.Seq	Model-Based Clustering for RNA-seq Data
MBESS	MBESS
MBI	(M)ultiple-site (B)iodiversity (I)ndices Calculator
mblm	Median-Based Linear Models
MBmca	Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
mbmdr	Model Based Multifactor Dimensionality Reduction
mboost	Model-Based Boosting
mc2d	Tools for Two-Dimensional Monte-Carlo Simulations
MCAPS	MCAPS data and results
mcbiopi	Matrix Computation Based Identification Of Prime Implicants
mcclust	Process an MCMC Sample of Clusterings
MCE	Tools for evaluating Monte Carlo Error
mcga	Machine coded genetic algorithms for real-valued optimization problems
mcgibbsit	Warnes and Raftery's MCGibbsit MCMC diagnostic
mchof	multicore higher-order functions
MChtest	Monte Carlo hypothesis tests with Sequential Stopping
mcIRT	IRT models for multiple choice items (mcIRT)
MCLIME	Simultaneous Estimation of the Regression Coefficients and Precision Matrix
mcll	Monte Carlo Local Likelihood Estimation
mclogit	Mixed Conditional Logit
mclust	Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation
mclust02	Model-based cluster analysis (older version)
mcmc	Markov Chain Monte Carlo
MCMCglmm	MCMC Generalised Linear Mixed Models
MCMChybridGP	Hybrid Markov chain Monte Carlo using Gaussian Processes
MCMCpack	Markov chain Monte Carlo (MCMC) Package
mcmcplots	Create Plots from MCMC Output
mcmcse	Monte Carlo Standard Errors for MCMC
MCMCtGARCH	MCMCtGARCH package
MCMCtGARCHM	MCMCtGARCHM package
MCMCtNARCH	MCMCtNARCH package
mco	Multi criteria optimization algorithms and related functions
Mcomp	Data from the M-competitions
MCPAN	Multiple comparisons using normal approximation
McParre	Run a Regenerative Markov chain in Parallel on a Cluster
mcpd	Tools to analyse and use passport data for biological collections.
MCPerm	A Monte Carlo permutation method for multiple test correlation in case/control association study
MCPMod	Design and Analysis of Dose-Finding Studies (see also DoseFinding package)
mcprofile	Multiple Contrast Profiles
mcr	Method Comparison Regression
mcsm	Functions for Monte Carlo Methods with R
McSpatial
MCUSUM	Multivariate Cumulative Sum (MCUSUM) Control Chart
mda	Mixture and flexible discriminant analysis
MDD	Minimum Detectable Difference Calculations
mded	Measuring the difference between two empirical distributions
MDM	Multinomial Diversity Model
MDPtoolbox	Markov Decision Processes toolbox
MDR	Detect gene-gene interactions using multifactor dimensionality reduction
MDSGUI	A GUI for interactive MDS in R
meboot	Maximum Entropy Bootstrap for Time Series
mecdf	Multivariate Empirical Cumulative Distribution Functions
medAdherence	Medication Adherence: Commonly Used Definitions
mederrRank	Bayesian Methods for Identifying the Most Harmful Medication Errors
mediation	R Package for Causal Mediation Analysis
MeDiChI	MeDiChI ChIP-chip deconvolution library
MedOr	Median Ordering Statistical R package
medSTC	A max-margin supervised Sparse Topical Coding Model
MEET	MEET: Motif Elements Estimation Toolkit
mefa	Multivariate Data Handling in Ecology and Biogeography
mefa4	Multivariate Data Handling with S4 Classes and Sparse Matrices
meifly	Interactive model exploration using GGobi
melody	Statistical Methods for the Quantitative Analysis of Song Spectrograms
mem	Moving Epidemics Method R Package.
memisc	Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation
memoise	Memoise functions
MEMSS	Data sets from Mixed-effects Models in S
MergeGUI	A GUI for Merging Datasets in R
merror	Accuracy and Precision of Measurements
MESS	Miscellaneous esoteric statistical scripts
meta	Meta-Analysis with R
MetABEL	meta-analysis of genome-wide SNP association results
MetabolAnalyze	Probabilistic latent variable models for metabolomic data.
metabolomics	A collection of functions for analysing metabolomics data
Metabonomic	GUI for Metabonomic Analysis
metacom	Analysis of the 'elements of metacommunity structure'
metacor	Meta-analysis of correlation coefficients
Metadata	Collates Metadata for Climate Surface Stations
MetaDE	MetaDE: Microarray meta-analysis for differentially expressed gene detection
metafor	Meta-Analysis Package for R
metagen	Generalised Inference in the Random Effects Meta Regression Model
metaLik	Likelihood inference in meta-analysis and meta-regression models.
metaMA	Meta-analysis for MicroArrays
metamisc	Diagnostic and prognostic meta analysis (metamisc)
MetaPath	Perform the Meta-Analysis for Pathway Enrichment analysis (MAPE).
MetaPCA	MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
MetaQC	MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
MetaSKAT	Meta analysis for SNP-set (Sequence) Kernel Association Test
metatest	Fit and test metaregression models
meteogRam	Tools for plotting meteograms
Meth27QC	Meth27QC: sample quality analysis, and sample control analysis
MethComp	Functions for analysis of method comparison studies.
Metrics	Evaluation metrics for machine learning
metRology	Support for metrological applications
metrumrg	Pharmacometric tools for data preparation, modeling, simulation, and reporting
mets	Analysis of Multivariate Event Times
MEWMA	Multivariate Exponentially Weighted Moving Average (MEWMA) Control Chart
MExPosition	Multi-table ExPosition
MFDA	Model Based Functional Data Analysis
MFDF	Modeling Functional Data in Finance
mFilter	Miscellaneous time series filters
mfp	Multivariable Fractional Polynomials
mfr	Minimal Free Resolutions of Graph Edge Ideals
MFSAS	Creation and Evaluation of Multilevel Fixed and Sequential Sampling Plans
mgcv	Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
mgpd	mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
mgraph
MHadaptive	General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
mhsmm	Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences.
mht	Multiple Hypotheses Testing For Variable Selection
mhurdle	Estimation of models with limited dependent variables
mi	Missing Data Imputation and Model Checking
mice	Multivariate Imputation by Chained Equations
micEcon	Microeconomic Analysis and Modelling
micEconAids	Demand Analysis with the Almost Ideal Demand System (AIDS)
micEconCES	Analysis with the Constant Elasticity of Scale (CES) function
micEconSNQP	Symmetric Normalized Quadratic Profit Function
MiClip	A Model-based Approach to Identify Binding Sites in CLIP-Seq Data
microbenchmark	Sub microsecond accurate timing functions.
micromap	Linked Micromap Plots
MicroStrategyR	MicroStrategyR Package
MIfuns	Pharmacometric tools for data preparation, modeling, simulation, and reporting
MigClim	Implementing dispersal into species distribution models
migest	Useful R code for the Estimation of Migration
migui	Graphical User Interface of the mi Package
MImix	Mixture summary method for multiple imputation
mimR	A package for graphical modelling in R
MindOnStats	Data sets included in Utts and Heckard's Mind on Statistics
minerva	minerva: Maximal Information-Based Nonparametric Exploration R package for Variable Analysis
minet	Mutual Information NETworks
Miney	Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
miniGUI	tktcl quick and simple function GUI.
minimax	Minimax distribution family
minpack.lm	R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK, plus support for bounds
minPtest	Gene region-level testing procedure for SNP data, using the min P test resampling approach
minqa	Derivative-free optimization algorithms by quadratic approximation
minxent	Entropy Optimization Distributions
miP	Multiple Imputation Plots
MIPHENO	Mutant Identification through Probabilistic High throughput Enabled NOrmalization
miRada	MicroRNA Microarray Data Analysis
mirf	MULTIPLE IMPUTATION AND RANDOM FORESTS FOR UNOBSERVABLE PHASE, HIGH-DIMENSIONAL DATA
mirt	Multidimensional Item Response Theory
miRtest	combined miRNA- and mRNA-testing
MISA	Bayesian Model Search and Multilevel Inference for SNP Association Studies
misc3d	Miscellaneous 3D Plots
miscF	Miscellaneous Functions
miscFuncs	Miscellaneous Useful Functions
MiscPsycho	Miscellaneous Psychometric Analyses
miscTools	Miscellaneous Tools and Utilities
missForest	Nonparametric Missing Value Imputation using Random Forest
MissingDataGUI	A GUI for Missing Data Exploration
missMDA	Handling missing values with/in multivariate data analysis (principal component methods)
MiST	Mixed effects Score Test for continuous outcomes
mistral	Methods in Structural Reliability
MitISEM	Mixture of Student t Distributions using Importance Sampling and Expectation Maximization
mitools	Tools for multiple imputation of missing data
mix	Estimation/multiple Imputation for Mixed Categorical and Continuous Data
mixAK	Mixture of methods including mixtures
mixcat	Mixed effects cumulative link and logistic regression models
mixdist	Finite Mixture Distribution Models
mixedQF	Estimator with Qudratics Forms in Mixeds Models
mixer	Random graph clustering
mixexp	Design and analysis of mixture experiments
mixfdr	Computes false discovery rates and effect sizes using normal mixtures
mixlow	mixlow method for assessing drug synergism
MixMAP	Implements the MixMAP algorithm
MixMod	Analysis of Mixed Models
mixOmics	Omics Data Integration Project
mixPHM	Mixtures of proportional hazard models.
mixRasch	Mixture Rasch Models with JMLE
mixreg	Functions to fit mixtures of regressions.
mixsep	Forensic Genetics DNA Mixture Separation
MixSim	Simulating Data to Study Performance of Clustering Algorithms
mixsmsn	Fitting finite mixture of scale mixture of skew-normal distributions .
mixstock	functions for mixed stock analysis
mixtools	Tools for analyzing finite mixture models
mixture	Mixture Models for Clustering and Classification
MixtureInf	Inference for Finite Mixture Models
mkin	Routines for fitting kinetic models with one or more state variables to chemical degradation data
MKLE	Maximum kernel likelihood estimation.
MKmisc	Miscellaneous Functions from M. Kohl
mkssd	Efficient multi-level k-circulant supersaturated designs
mlbench	Machine Learning Benchmark Problems
MLCM	Maximum Likelihood Conjoint Measurement
mlCopulaSelection	Copula selection and fitting using maximum likelihood
MLDA	Methylation Linear Discriminant Analysis (MLDA)
MLDS	Maximum Likelihood Difference Scaling
mlearning	Machine learning algorithms with unified interface and confusion matrices
MLEcens	Computation of the MLE for bivariate (interval) censored data
mlegp	Maximum Likelihood Estimates of Gaussian Processes
MLEP	Maximum likelihood estimate of penetrance parameters
mleur	Maximum likelihood unit root test
mlgt	Multi-Locus Geno-Typing
mlica	Independent Component Analysis using Maximum Likelihood
mlica2	Independent Component Analysis using Maximum Likelihood
mlmmm	ML estimation under multivariate linear mixed models with missing values
mlmRev	Examples from Multilevel Modelling Software Review
mlogit	multinomial logit model
mlogitBMA	Bayesian Model Averaging for Multinomial Logit Models
MLPAstats	MLPA analysis to detect gains and loses in genes
mlPhaser	Multi-Locus Haplotype Phasing
MM	The multiplicative multinomial distribution
mmand	Mathematical Morphology in Any Number of Dimensions
mmap	Map Pages of Memory
mmcm	Modified Maximum Contrast Method
mmds
mmeln	MMELN : Estimation of multinormal mixture distribution.
mmeta	Multivariate Meta-Analysis Using Sarmanov Beta Prior Distributions
MMG	Mixture Model on Graphs
MMIX	Model selection uncertainty and model mixing
mmlcr	Mixed-Mode Latent Class Regression
mmm	Multivariate Marginal Models
mmm2	Multivariate marginal models with shared regression parameters
mmod
MMS	Fixed effects Selection in Linear Mixed Models
MMST	DATASETS FROM MMST
MNM	Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
mnormt	The multivariate normal and t distributions
MNP	R Package for Fitting the Multinomial Probit Model
mnspc	Multivariate Nonparametric Statistical Process Control
mobForest
Mobilize	Mobilize plots and functions
moc	GENERAL NONLINEAR MIXTURES OF CURVES
MOCCA	Multi-objective optimization for collecting cluster alternatives
Modalclust	Hierarchical Modal Clustering
modeest	Mode Estimation
modehunt	Multiscale Analysis for Density Functions
modelcf	Modeling physical computer codes with functional outputs using clustering and dimensionality reduction
modelfree	Model-free estimation of a psychometric function
ModelGood	Validation of risk prediction models
ModelMap	Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps.
modeltools	Tools and Classes for Statistical Models
modiscloud	R tools for processing Level 2 Cloud Mask products from MODIS
modTempEff	Modelling temperature effects using time series data
moduleColor	Basic module functions
MOJOV	Mojo Variants: Rare Variants analysis
mokken	Mokken Scale Analysis in R
mombf	Moment and Inverse Moment Bayes factors
moments	Moments, cumulants, skewness, kurtosis and related tests
Momocs	Shape Analysis of Outlines
mondate	Keep track of dates in terms of months
MonetDB.R	Connect MonetDB to R
monmlp	Monotone multi-layer perceptron neural network
monomvn	Estimation for multivariate normal and Student-t data with monotone missingness
MonoPoly	Functions to fit monotone polynomials
monoProc	strictly monotone smoothing procedure
monreg	Nonparametric monotone regression
moonsun	Basic astronomical calculations with R
Morpho	Calculations and visualizations related to Geometric Morphometrics
MorseGen
MortalitySmooth	Smoothing and forecasting Poisson counts with P-splines
mosaic	Project MOSAIC (mosaic-web.org) statistics and mathematics teaching utilities
mosaicManip	Project MOSAIC (mosaic-web.org) manipulate examples.
mota	Mean Optimal Transformation Approach
motmot	Models of Trait Macroevolution on Trees
moult	Models for Analysing Moult Data
move	Visualizing and analyzing animal track data
movMF	Mixtures of von Mises-Fisher Distributions
mpa	CoWords Method
mpc	MPC - Multiple Precision Complex Library
MPCI	Multivariate Process Capability Indices (MPCI)
MPDiR	Data sets and scripts for Modeling Psychophysical Data in R
MplusAutomation	Automating Mplus Model Estimation and Interpretation
mpm	Multivariate Projection Methods
mpMap	Multi-parent RIL genetic analysis
mpmcorrelogram	Multivariate Partial Mantel Correlogram
mpoly	Symbolic computation and more with multivariate polynomials
mprobit	Multivariate probit model for binary/ordinal response
mpt	Multinomial Processing Tree (MPT) Models
MPTinR	Analyze Multinomial Processing Tree Models
MPV	Data Sets from Montgomery, Peck and Vining's Book
mr	Marginal regresson models for dependent data
mra	Analysis of Mark-Recapture data
mratios	Inferences for ratios of coefficients in the general linear model
MRCE	MRCE
mrdrc	Model-robust concentration-response analysis
mrds	Mark-Recapture Distance Sampling (mrds)
mritc	MRI tissue classification.
mRm	An R package for conditional maximum likelihood estimation in mixed Rasch models.
mRMRe	R package for parallelized mRMR ensemble feature selection
mrp
mrpdata
mrt	Wright & London's Modern Regression Techniques
msap	Statistical analysis for Methylation-sensitive Amplification Polymorphism data
msarc	Draws diagrams (mis)representing the results of mass spec experiments
MsatAllele	Visualizes the scoring and binning of microsatellite fragment sizes
msBreast	Protein Mass Spectra Dataset from a Breast Cancer Study
MSBVAR	Markov-Switching, Bayesian, Vector Autoregression Models
msDilution	Protein Mass Spectra Dataset from a Dilution Experiment
mseapca	Metabolite set enrichment analysis for factor loading in principal component analysis
MSeasy	Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
MSeasyTkGUI	MSeasy Tcl/Tk Graphical User Interface
mseq	Modeling non-uniformity in short-read rates in RNA-Seq data
MSG	Data and functions for the book Modern Statistical Graphics
msgps	Degrees of freedom of elastic net, adaptive lasso and generalized elastic net
msir	Model-based Sliced Inverse Regression
msm	Multi-state Markov and hidden Markov models in continuous time
msme	Functions and Datasets for "Methods of Statistical Model Estimation".
mspath	Multi-state Path-Dependent Models in Discrete Time
msProcess	Protein Mass Spectra Processing
msProstate	Protein Mass Spectra Dataset from a Prostate Cancer Study
MSQC	Multivariate Statistical Quality Control
msr	Morse-Smale approximation, regression and visualization
msSurv	Nonparametric Estimation for Multistate Models
mstate	Data preparation, estimation and prediction in multi-state models
MSToolkit	The MSToolkit library for clinical trial design
MSVAR	Markov Switching VAR
MSwM	Fitting Markov Switching Models
mtcreator	Creating MAGE-TAB files using mtcreator
mtsc	Multivariate Timeseries Clusters
mtsdi	Multivariate time series data imputation
MTSKNN	Multivariate two-sample tests based on K-nearest-neighbors
MTurkR	Access to Amazon Mechanical Turk Requester API via R
MUCflights	Munich Franz-Josef-Strauss Airport Pattern Analysis
MuFiCokriging	Multi-Fidelity Cokriging models
mugnet	Mixture of Gaussian Bayesian Network Model
muhaz	Hazard Function Estimation in Survival Analysis
multcomp	Simultaneous Inference in General Parametric Models
multcompView	Visualizations of Paired Comparisons
MultEq	Multiple Equivalence Tests and Simultaneous Confidence Intervals
multgee	GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
multibiplotGUI	Multibiplot Analysis in R
multic	Quantitative linkage analysis tools using the variance components approach
MultiChIPmixHMM	MultiChIPmixHMM
Multiclasstesting	Performance of N-ary classification testing
multicool	Permutations of multisets in cool-lex order.
multicore	Parallel processing of R code on machines with multiple cores or CPUs
MultiLCIRT	Multidimensional latent class Item Response Theory models
multilevel	Multilevel Functions
multilevelPSA	Multilevel Propensity Score Analysis
MultinomialCI	Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
multinomRob	Robust Estimation of Overdispersed Multinomial Regression Models
MultiOrd	Generation of multivariate ordinal variates.
MultiPhen	MultiPhen, a package for the genetic association testing of multiple phenotypes
multiPIM	Variable Importance Analysis with Population Intervention Models
multipol	multivariate polynomials
multisensi	Multivariate Sensitivity Analysis
multitable	Simultaneous manipulation of multiple arrays of data, with data.list objects
multitaper	Multitaper Spectral Analysis
multivator
multmod	Testing of multiple outcomes
multtest	Resampling-based multiple hypothesis testing
multxpert	Common Multiple Testing Procedures and Gatekeeping Procedures
muma	Metabolomics Univariate and Multivariate Analysis
MuMIn	Multi-model inference
munfold	Metric Unfolding
munsell	Munsell colour system
muRL	Mailmerge using R, LaTeX, and the Web
muS2RC	Splus to R Compatibility for package muStat
muscle	Multiple Sequence Alignment
muscor	Multi-stage Convex Relaxation
muStat	Prentice Rank Sum Test and McNemar Test
mutatr	Mutable objects for R.
mutoss	Unified multiple testing procedures
mutossGUI	A graphical user interface for the MuToss Project
muUtil	muStat Utility Functions
MVA	An Introduction to Applied Multivariate Analysis with R
mvabund	statistical methods for analysing multivariate abundance data
MVB	Mutivariate Bernoulli log-linear model
mvbutils	Workspace organization, code and documentation editing, package prep and editing, etc.
mvc	Multi-View Clustering
mvgraph	Multivariate, Interactive Visualization
mvinfluence	Influence Measures and Diagnostic Plots for Multivariate Linear Models
mvmeta	Multivariate meta-analysis and meta-regression
MVN	Multivariate Normality Tests
mvna	Nelson-Aalen estimator of the cumulative hazard in multistate models
mvngGrAd	Software for moving grid adjustment in plant breeding field trials
mvnmle	ML estimation for multivariate normal data with missing values.
mvnormtest	Normality test for multivariate variables
mvoutlier	Multivariate outlier detection based on robust methods
mvpart	Multivariate partitioning
MVPARTwrap	MVPARTwrap: Additional functionnalities for package mvpart.
MVpower	Give power for a given effect size using multivariate classification methods
mvProbit	Multivariate Probit Models
MVR	Mean-Variance Regularization
mvsf	Shapiro-Francia Multivariate Normality Test
mvShapiroTest	Generalized Shapiro-Wilk test for multivariate normality
mvtBinaryEP	Generates Correlated Binary Data
mvtmeta	Multivariate meta-analysis
mvtnorm	Multivariate Normal and t Distributions
mvtnormpcs	Multivariate Normal and T Distribution functions of (Dunnett, 1989)
mvtsplot	Multivariate Time Series Plot
mxkssd	Efficient mixed-level k-circulant supersaturated designs
myepisodes
nacopula	Nested Archimedean Copulas
NADA	Nondetects And Data Analysis for environmental data
nadiv	Functions to construct non-additive genetic relatedness matrices
namespace	Provide namespace managment functions not (yet) present in base R
nanop	tools for nanoparticle simulation and PDF calculation
NanoStringNorm	Normalize NanoString miRNA and mRNA data
NbClust	An examination of indices for determining the number of clusters : NbClust Package
NBDdirichlet	NBD-Dirichlet model of consumer buying behavior for marketing research
nbpMatching	functions for non-bipartite optimal matching
NBPSeq	Negative Binomial Models for RNA-Sequencing Data
nCal	Nonlinear Calibration
NCBI2R	NCBI2R-An R package to navigate and annotate genes and SNPs
ncbit	retrieve and build NBCI taxonomic data
ncdf	Interface to Unidata netCDF data files
ncdf4	Interface to Unidata netCDF (version 4 or earlier) format data files
nCDunnett	Noncentral Dunnett's test distribution
ncf	spatial nonparametric covariance functions
ncg	Computes the noncentral gamma function
ncomplete	ncomplete
ncvar	High-level R Interface to NetCDF Datasets
ncvreg	Regularization paths for SCAD- and MCP-penalized regression models
ndl	Naive Discriminative Learning
ndvits	NDVI Time series extraction and analysis
neariso	Near-Isotonic Regression
NeatMap	Non-clustered heatmap alternatives
negenes	Estimating the number of essential genes in a genome
neldermead	R port of the Scilab neldermead module
NeMo	Exceptionnal Network Motifs in biological networks
nephro	Biostatistics utilities for nephrology
NestedCohort	Survival Analysis for Cohorts with Missing Covariate Information
NetCluster	Clustering for networks
NetComp	Network Generation and Comparison
NetData	Network Data for McFarland's SNA R labs
NetIndices	Estimating network indices, including trophic structure of foodwebs in R
netmodels	Tools for the study of scale free and small world networks
NetPreProc
nets	Network Estimation for Time Series
network	Classes for Relational Data
NetworkAnalysis	Statistical inference on populations of weighted or unweighted networks.
networkDynamic	Dynamic Extensions for Network Objects
networksis	Simulate bipartite graphs with fixed marginals through sequential importance sampling
networkTomography	Tools for network tomography
neural	Neural Networks
neuralnet	Training of neural networks
neuroblastoma	Neuroblastoma
neuRosim	Functions to generate fMRI data including activated data, noise data and resting state data.
nFactors	Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test
nfda	Nonparametric Functional Data Analysis
nFDR	Nonparametric Estimate of FDR Based on Bernstein Polynomials
nga	NGA Earthquake Ground Motion Prediction Equations
ngspatial	Classes for Spatial Data
NHEMOtree	Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification
NHPoisson	Modelling and validation of non homogeneous Poisson processes
nice	Get or Set UNIX Niceness
NightDay	Night and Day Boundary Plot Funtion
Nippon	Japanese utility functions and data
NISTnls	Nonlinear least squares examples from NIST
nlADG	Regression in the Normal Linear ADG Model
nleqslv	Solve systems of non linear equations
nlme	Linear and Nonlinear Mixed Effects Models
nlmeODE	Non-linear mixed-effects modelling in nlme using differential equations
nlmrt	Functions for nonlinear least squares solutions
nloptr	R interface to NLopt
nlreg	Higher Order Inference for Nonlinear Heteroscedastic Models
NLRoot	searching for the root of equation
nlrwr	Nonlinear regression with R
nls2	Non-linear regression with brute force
nlsmsn	Fitting nonlinear models with scale mixture of skew-normal distributions.
nlstools	Tools for nonlinear regression diagnostics
NlsyLinks
nlt	A nondecimated lifting transform for signal denoising
nltm	Non-linear Transformation Models
nlts	(non)linear time series analysis
NMF	Algorithms and framework for Nonnegative Matrix Factorization (NMF).
NMFN	Non-negative Matrix Factorization
NMMAPSlite	NMMAPS Data Lite
NMOF	Numerical Methods and Optimization in Finance
NMRS	NMR Spectroscopy
nnc	Nearest Neighbor Autocovariates
nnclust	Nearest-neighbour tools for clustering
nncRda	Improved RDA Using nnc
nnDiag	k-Nearest Neighbor Diagnostic Tools
nnet	Feed-forward Neural Networks and Multinomial Log-Linear Models
nnls	The Lawson-Hanson algorithm for non-negative least squares (NNLS)
nodeHarvest	Node Harvest for regression and classification
noia	Implementation of the Natural and Orthogonal InterAction (NOIA) model
nonbinROC	ROC-type analysis for non-binary gold standards
nonparaeff	Nonparametric Methods for Measuring Efficiency and Productivity
NonpModelCheck	Model Checking and Variable Selection in Nonparametric Regression
nonrandom	Stratification and matching by the propensity score
nontarget	Detecting, combining and filtering isotope, adduct and homologue series relations in high-resolution mass spectrometry (HRMS) data
nopp	Nash Optimal Party Positions
nor1mix	Normal (1-d) Mixture Models (S3 Classes and Methods)
nordklimdata1	Dataset for climate analysis with data from the Nordic region
norm	Analysis of multivariate normal datasets with missing values
NormalGamma	Normal-gamma convolution model
normalp	Package for exponential power distributions (EPD)
NORMT3	Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t
normwhn.test	Normality and White Noise Testing
normwn.test	Normality and White Noise Testing
nortest	Tests for Normality
nose	nose Package for R
notifyR	Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!)
noverlap	ncomplete
noweb	Noweb system for R
Nozzle.R1	Nozzle Reports
np	Nonparametric kernel smoothing methods for mixed data types
nparcomp	Perform multiple comparisons and compute simultaneous confidence intervals for the nonparametric relative contrast effects.
nparLD	Nonparametric Analysis of Longitudinal Data in Factorial Experiments
NPCD	Nonparametric Methods for Cognitive Diagnosis
NPCirc	Nonparametric Circular Methods
npde	Normalised prediction distribution errors for nonlinear mixed-effect models
NPHMC	Sample Size Calculation for the Proportional Hazards Cure Model
nplplot	Plotting non-parametric linkage results
npmc	Nonparametric Multiple Comparisons
npmlreg	Nonparametric maximum likelihood estimation for random effect models
NPMPM	tertiary probabilistic model in predictive microbiology for use in food manufacture
npmv	Nonparametric Comparison of Multivariate Samples
nppbib	Nonparametric Partially-Balanced Incomplete Block Design Analysis
npRmpi	Parallel nonparametric kernel smoothing methods for mixed data types
NPsimex	Nonparametric Smoothing for contaminated data using Simulation-Extrapolation
npst	Generalization of Hewitt's Seasonality Test
NRAIA	Data sets from "Nonlinear Regression Analysis and Its Applications"
nricens	NRI for risk prediction models with time to event data
NSA	Post-normalization of total copy numbers
NScluster	Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
nsprcomp	Non-Negative Sparse PCA
nsRFA	Non-supervised Regional Frequency Analysis
nullabor	Tools for graphical inference
numbers	Number-theoretic Functions
numConversion	Test of accuracy of formatting numbers.
numDeriv	Accurate Numerical Derivatives
nutshell	Data for "R in a Nutshell"
nutshell.audioscrobbler	Audioscrobbler data for "R in a Nutshell"
nutshell.bbdb	Baseball Database for "R in a Nutshell"
nutshellDE	Beispieldaten zu "R in a Nutshell" [deutsche Ausgabe]
nvis	Combination of visualization functions for nuclear data using ggplot2 and ggcolpairs.
nws	R functions for NetWorkSpaces and Sleigh
nytR	Provides access to the NY Times API.
OAIHarvester	Harvest Metadata Using OAI-PMH v2.0
Oarray	Arrays with arbitrary offsets
objectProperties	A factory of self-describing properties.
objectSignals	objectSignals
obliclus	Cluster-based factor rotation
oblique.tree	Oblique Trees for Classification Data
obliqueRF	Oblique Random Forests from Recursive Linear Model Splits
obsSens	Sensitivity analysis for Observational studies.
oc	OC Roll Call Analysis Software.
occ
oce	Analysis of Oceanographic data
ocomposition	Gibbs sampler for ordered compositional data
ODB	Open Document Databases (.odb) management
odesolve	Solvers for Ordinary Differential Equations
odfWeave	Sweave processing of Open Document Format (ODF) files
odfWeave.survey	Support for odfWeave on the survey package
odprism	Optimal design and performance of random intercept and slope models.
oem	Orthogonalizing Expectation maximization
ofp	Object-Functional Programming.
ofw	Optimal Feature Weighting algorithm
Ohmage	R Client for Mobilize/Andwellness server
OIdata	Data sets and supplements (OpenIntro)
OIsurv
OjaNP	Multivariate Methods Based on the Oja Median and Related Concepts
okmesonet	Retrieve Oklahoma Mesonet climatological data
OligoSpecificitySystem	Oligo Specificity System
OLScurve
omd	filter the molecular descriptors for QSAR
OmicKriging	OmicKriging for Phenotypic Prediction
oncomodel	Maximum likelihood tree models for oncogenesis
Oncotree	Estimating oncogenetic trees
OneHandClapping
onemap	Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
OneTwoSamples	Deal with one and two (normal) samples