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aroma.affymetrix

Analysis of large Affymetrix microarray data sets
Henrik Bengtsson, James Bullard, Kasper Hansen, Pierre Neuvial, Elizabeth Purdom, Mark Robinson, Ken Simpson
LGPL (>= 2.1)
This package implements classes for files and sets of files for various Affymetrix file formats, e.g. AffymetrixCdfFile, AffymetrixCelFile, and AffymetrixCelSet. These are designed to be memory efficient but still being fast. The idea is to keep all data on file and only read data into memory when needed. Clever caching mechanisms are used to minimize the overhead of data IO. All of the above is hidden in the package API and for the developer (and the end user), the data is queried as if it lives in memory. With this design it is only the diskspace that limits the number of arrays that can be analyzed. To install, do: source("http://www.aroma-project.org/hbLite.R"); hbInstall("aroma.affymetrix").
Versions
Package Version Released
aroma.affymetrix 2.9.0 1 year 33 weeks ago
aroma.affymetrix 2.8.0 2 years 10 hours ago
aroma.affymetrix 2.7.0 2 years 3 weeks ago
aroma.affymetrix 2.6.0 2 years 15 weeks ago
aroma.affymetrix 2.5.0 2 years 38 weeks ago
aroma.affymetrix 2.4.0 2 years 49 weeks ago
aroma.affymetrix 2.3.0 3 years 7 weeks ago
aroma.affymetrix 2.2.0 3 years 15 weeks ago
aroma.affymetrix 2.10.0 1 year 19 weeks ago
aroma.affymetrix 2.1.8 3 years 16 weeks ago
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