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ADaCGH

Analysis of data from aCGH experiments
Ramon Diaz-Uriarte <rdiaz02@gamil.com>, Oscar M. Rueda <rueda.om@gamil.com>. Wavelet-based aCGH smoothing code from Li Hsu <lih@fhcrc.org> and Douglas Grove <dgrove@fhcrc.org>. Imagemap code from Barry Rowlingson <B.Rowlingson@lancaster.ac.uk>. HaarSeg code from Erez Ben-Yaacov; downloaded from <http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm>
GPL (>= 3)
Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's modification of Smith & Waterman's algorith. Most computations are parallelized. Figures are imagemaps with links to IDClight (http://idclight.bioinfo.cnio.es).
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Package Version Released
ADaCGH 1.5-3 4 years 23 weeks ago
ADaCGH 1.3-7
ADaCGH 1.3-4
ADaCGH 1.3-13
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