| cghE1 {ADaCGH} | A fictitious aCGH data set |
| cghMCRe {ADaCGH} | A fictitious aCGH data set |
| doMCR {ADaCGH} | Find minimal common regions |
| mpiInit {ADaCGH} | Initialized a cluster of workstations |
| pSegment {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentACE {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentBioHMM {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentCGHseg {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentDNAcopy {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentGLAD {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentHaarSeg {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentHMM {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentPSW {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentWavelets {ADaCGH} | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| segmentPlot {ADaCGH} | Segment plots for aCGH |
| SegmentPlotWrite {ADaCGH} | Segment aCGH data, plot, and write out results |
| summary.ACE {ADaCGH} | Gains/loss and FDR from an ACE object |
| summary.ACE.array {ADaCGH} | Gains/loss and FDR from an ACE object |
| tempdir2 {ADaCGH} | Create a directory for output |
| writeResults {ADaCGH} | Write results to an external file |
