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Reference index for {ADaCGH}

Function/ClassDescription
cghE1 {ADaCGH}A fictitious aCGH data set
cghMCRe {ADaCGH}A fictitious aCGH data set
doMCR {ADaCGH}Find minimal common regions
mpiInit {ADaCGH}Initialized a cluster of workstations
pSegment {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentACE {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentBioHMM {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentCGHseg {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentDNAcopy {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentGLAD {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHaarSeg {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHMM {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentPSW {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentWavelets {ADaCGH}Parallelized/"unified" versions of several aCGH segementation algorithms/methods
segmentPlot {ADaCGH}Segment plots for aCGH
SegmentPlotWrite {ADaCGH}Segment aCGH data, plot, and write out results
summary.ACE {ADaCGH}Gains/loss and FDR from an ACE object
summary.ACE.array {ADaCGH}Gains/loss and FDR from an ACE object
tempdir2 {ADaCGH}Create a directory for output
writeResults {ADaCGH}Write results to an external file