obj.haplomax.HS.add {HAPim}
Analysis of variance of the HaploMmax method in half-sib family design
Description
The function computes the regression analysis with a dose haplotype effect and a sire effect in a design of half-sib families. It can be viewed as an internal function. The user does not have to call it by himself.
Usage
obj.haplomax.HS.add(genea, perf, CD, assoc, res.structure, pi.hap, cor.pere, cor.mere)
Arguments
- genea
- numeric matrix (number of individuals x 2) which contains individual index and corresponding sire index of each individual.
- perf
- numeric vector of length=number of individuals which contains the performances of individuals.
- CD
- numeric vector of length=number of individuals which contains the CD of individuals. var(perf$_i$)=error variance/CD$^2_i$
- assoc
- numeric value, associated haplotype
- res.structure
- provided by
structure.hap()function, list of objects. - pi.hap
- provided by
pi.hap()function, list of numeric objects. - cor.pere
- provided by
corresp()function, list of numeric objects. - cor.mere
- provided by
corresp()function, list of numeric objects.
Values
The returned value is an object of aov class containing the dose haplotype + sire effect regression.
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
See Also
corresp, pi.hap, structure.hap
Documentation reproduced from package HAPim, version 1.3. License: GPL