MALDIquant provides a complete analysis pipeline for MALDI-TOF and other 2-dimensional mass spectrometry data. Distinctive features include baseline subtraction methods such as TopHat or SNIP, peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.
For a first overview run
|License:||GPL (>= 3)|
MassPeaks: Represents a peak list of a single spectrum.
MassSpectrum: Represents a single spectrum.
The accompanying website (see below) provides example R scripts to illustrate the functionality of this package, too.
S. Gibb and K. Strimmer. 2012. MALDIquant: a versatile R package for the analysis of mass spectrometry data. Bioinformatics 28: 2270-2271. http://bioinformatics.oxfordjournals.org/content/28/17/2270.abstract
See website: http://strimmerlab.org/software/maldiquant/
Documentation reproduced from package MALDIquant, version 1.8. License: GPL (>= 3)