Skip to Content
Home » Package reference » aroma.affymetrix » getAlleleCellPairs.AffymetrixCdfFile {aroma.affymetrix}

getAlleleCellPairs.AffymetrixCdfFile {aroma.affymetrix}

Gets the cell indices of allele pairs
Package: 
aroma.affymetrix
Version: 
2.9.0

Description

Gets the cell indices of allele pairs in units of type "genotyping" with 2 or 4 unit groups.

Usage

 
## S3 method for class 'AffymetrixCdfFile':
getAlleleCellPairs((this, units=NULL, stratifyBy=c("pm", "pmmm", "mm"), force=FALSE, ..., verbose=FALSE))

Arguments

units
A integer vector of units to query. If NULL, all units are considered.
stratifyBy
A character string specifying what type of probes to return.
...
Not used.
verbose
A logical or a Verbose object.

Values

Returns a Nx2 integer matrix of cell indices, where each row is a (PMA, PMB) probe pair.

See Also

For more information see AffymetrixCdfFile.

Author(s)

Henrik Bengtsson

Documentation reproduced from package aroma.affymetrix, version 2.9.0. License: LGPL (>= 2.1)