Skip to Content
Home » Package reference » aroma.affymetrix » calculateBaseline.ChipEffectSet {aroma.affymetrix}

calculateBaseline.ChipEffectSet {aroma.affymetrix}

Estimates the baseline signal chromosome by chromosome
Package: 
aroma.affymetrix
Version: 
2.9.0

Description

Estimates the baseline signal chromosome by chromosome.

Usage

 
## S3 method for class 'ChipEffectSet':
calculateBaseline((this, chromosomes=NULL, ploidy=2, defaultPloidy=NA, all=FALSE, force=FALSE, verbose=FALSE, ...))

Arguments

chromosomes
An integer vector specifying for which chromsosomes the baseline should be estimated. If NULL, all chromosomes are considered.
ploidy
An integer specifying the ploidy that the baseline should have.
defaultPloidy
An integer specifying the default ploidy of chromosomes that have not explicitly been allocated one.
all
If TRUE, signals are averaged also for cells that are not on the genome.
force
If TRUE, the CEL file that stores the is recreated.
verbose
See Verbose.
...
Not used.

See Also

getAverageFile(). For more information see ChipEffectSet.

Author(s)

Henrik Bengtsson

Documentation reproduced from package aroma.affymetrix, version 2.9.0. License: LGPL (>= 2.1)