Reference index for {aroma.affymetrix}
You are viewing package members beginning with the letter "A"
| Function/Class | Description |
|---|---|
| AffymetrixCdfFile.setRestructor {aroma.affymetrix} | Specifies a function through which |
| AffymetrixCelFile {aroma.affymetrix} | The AffymetrixCelFile class |
| AffymetrixCelFile.bgAdjustGcrma {aroma.affymetrix} | Applies probe sequence based background correction to a CEL file |
| AffymetrixCelFile.bgAdjustOptical {aroma.affymetrix} | Applies optical background correction to a CEL file |
| AffymetrixCelFile.bgAdjustRma {aroma.affymetrix} | Applies normExp background correction to a CEL file |
| AffymetrixCelFile.clearData {aroma.affymetrix} | Clears all or a subset of the fields in a CEL file |
| AffymetrixCelFile.clearData {aroma.affymetrix} | Clears all or a subset of the fields in a CEL file |
| AffymetrixCelFile.createFrom {aroma.affymetrix} | Creates a CEL file using another as a template |
| AffymetrixCelFile.fitQuantileNormFcn {aroma.affymetrix} | Fits quantile normalization functions for the arrays in the data set |
| AffymetrixCelFile.fromFile {aroma.affymetrix} | Defines an AffymetrixCelFile object from a CEL file |
| AffymetrixCelFile.fromFile {aroma.affymetrix} | Defines an AffymetrixCelFile object from a CEL file |
| AffymetrixCelFile.getCdf {aroma.affymetrix} | Gets the CDF structure for this CEL file |
| AffymetrixCelFile.getChipType {aroma.affymetrix} | Gets the chip type for this CEL file |
| AffymetrixCelFile.getHeader {aroma.affymetrix} | Gets the header of the CEL file |
| AffymetrixCelFile.getImage {aroma.affymetrix} | Creates an RGB Image object from a CEL file |
| AffymetrixCelFile.getTimestamp {aroma.affymetrix} | Gets the timestamp in the CEL header |
| AffymetrixCelFile.image270 {aroma.affymetrix} | Displays all or a subset of the data spatially |
| AffymetrixCelFile.normalizeQuantile {aroma.affymetrix} | Normalizes the probe intensities to a target empirical distribution |
| AffymetrixCelFile.plotDensity {aroma.affymetrix} | Plots the density of the probe signals on the array |
| AffymetrixCelFile.plotImage {aroma.affymetrix} | Displays a spatial plot of a CEL file |