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Reference index for {aroma.affymetrix}

You are viewing package members beginning with the letter "A"

Function/ClassDescription
AffymetrixCdfFile.setRestructor {aroma.affymetrix}Specifies a function through which
AffymetrixCelFile {aroma.affymetrix}The AffymetrixCelFile class
AffymetrixCelFile.bgAdjustGcrma {aroma.affymetrix}Applies probe sequence based background correction to a CEL file
AffymetrixCelFile.bgAdjustOptical {aroma.affymetrix}Applies optical background correction to a CEL file
AffymetrixCelFile.bgAdjustRma {aroma.affymetrix}Applies normExp background correction to a CEL file
AffymetrixCelFile.clearData {aroma.affymetrix}Clears all or a subset of the fields in a CEL file
AffymetrixCelFile.clearData {aroma.affymetrix}Clears all or a subset of the fields in a CEL file
AffymetrixCelFile.createFrom {aroma.affymetrix}Creates a CEL file using another as a template
AffymetrixCelFile.fitQuantileNormFcn {aroma.affymetrix}Fits quantile normalization functions for the arrays in the data set
AffymetrixCelFile.fromFile {aroma.affymetrix}Defines an AffymetrixCelFile object from a CEL file
AffymetrixCelFile.fromFile {aroma.affymetrix}Defines an AffymetrixCelFile object from a CEL file
AffymetrixCelFile.getCdf {aroma.affymetrix}Gets the CDF structure for this CEL file
AffymetrixCelFile.getChipType {aroma.affymetrix}Gets the chip type for this CEL file
AffymetrixCelFile.getHeader {aroma.affymetrix}Gets the header of the CEL file
AffymetrixCelFile.getImage {aroma.affymetrix}Creates an RGB Image object from a CEL file
AffymetrixCelFile.getTimestamp {aroma.affymetrix}Gets the timestamp in the CEL header
AffymetrixCelFile.image270 {aroma.affymetrix}Displays all or a subset of the data spatially
AffymetrixCelFile.normalizeQuantile {aroma.affymetrix}Normalizes the probe intensities to a target empirical distribution
AffymetrixCelFile.plotDensity {aroma.affymetrix}Plots the density of the probe signals on the array
AffymetrixCelFile.plotImage {aroma.affymetrix}Displays a spatial plot of a CEL file