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Reference index for {aroma.affymetrix}

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Function/ClassDescription
AffymetrixCelSet.getIntensities {aroma.affymetrix}Gets cell intensities from a set of cells and a set of arrays
AffymetrixCelSet.getUnitIntensities {aroma.affymetrix}Gets cell signals for a subset of units and a subset of arrays
AffymetrixCelSet.importFromDChip {aroma.affymetrix}Imports dChip-exported CEL files
AffymetrixCelSet.importFromDChip {aroma.affymetrix}Imports dChip-exported CEL files
AffymetrixCelSet.isDuplicated {aroma.affymetrix}Identifies duplicated CEL files
AffymetrixCelSet.nbrOfArrays {aroma.affymetrix}Gets the number of arrays in the file set
AffymetrixCelSet.normalizeQuantile {aroma.affymetrix}Normalizes samples to have the same empirical distribution
AffymetrixCelSet.plotDensity {aroma.affymetrix}Plots the densities of all samples
AffymetrixCelSet.setCdf {aroma.affymetrix}Sets the CDF structure for this CEL set
AffymetrixCelSetReporter {aroma.affymetrix}The AffymetrixCelSetReporter class
AffymetrixCelSetReporter.getDataSet {aroma.affymetrix}Gets the data set
AffymetrixCelSetTuple {aroma.affymetrix}The AffymetrixCelSetTuple class
AffymetrixCnChpSet {aroma.affymetrix}The AffymetrixCnChpSet class
AffymetrixCnChpSet.nbrOfArrays {aroma.affymetrix}Gets the number of arrays in the file set
AffymetrixFile {aroma.affymetrix}The abstract AffymetrixFile class
AffymetrixFileSet {aroma.affymetrix}The AffymetrixFileSet class
AffymetrixFileSet.byPath {aroma.affymetrix}Defines an AffymetrixFileSet object by searching for Affymetrix files
AffymetrixFileSet.byPath {aroma.affymetrix}Defines an AffymetrixFileSet object by searching for Affymetrix files
AffymetrixFileSetReporter {aroma.affymetrix}The AffymetrixFileSetReporter class
AffymetrixPgfFile {aroma.affymetrix}The AffymetrixPgfFile class