| AffymetrixCelSet.getIntensities {aroma.affymetrix} | Gets cell intensities from a set of cells and a set of arrays |
| AffymetrixCelSet.getUnitIntensities {aroma.affymetrix} | Gets cell signals for a subset of units and a subset of arrays |
| AffymetrixCelSet.importFromDChip {aroma.affymetrix} | Imports dChip-exported CEL files |
| AffymetrixCelSet.importFromDChip {aroma.affymetrix} | Imports dChip-exported CEL files |
| AffymetrixCelSet.isDuplicated {aroma.affymetrix} | Identifies duplicated CEL files |
| AffymetrixCelSet.nbrOfArrays {aroma.affymetrix} | Gets the number of arrays in the file set |
| AffymetrixCelSet.normalizeQuantile {aroma.affymetrix} | Normalizes samples to have the same empirical distribution |
| AffymetrixCelSet.plotDensity {aroma.affymetrix} | Plots the densities of all samples |
| AffymetrixCelSet.setCdf {aroma.affymetrix} | Sets the CDF structure for this CEL set |
| AffymetrixCelSetReporter {aroma.affymetrix} | The AffymetrixCelSetReporter class |
| AffymetrixCelSetReporter.getDataSet {aroma.affymetrix} | Gets the data set |
| AffymetrixCelSetTuple {aroma.affymetrix} | The AffymetrixCelSetTuple class |
| AffymetrixCnChpSet {aroma.affymetrix} | The AffymetrixCnChpSet class |
| AffymetrixCnChpSet.nbrOfArrays {aroma.affymetrix} | Gets the number of arrays in the file set |
| AffymetrixFile {aroma.affymetrix} | The abstract AffymetrixFile class |
| AffymetrixFileSet {aroma.affymetrix} | The AffymetrixFileSet class |
| AffymetrixFileSet.byPath {aroma.affymetrix} | Defines an AffymetrixFileSet object by searching for Affymetrix files |
| AffymetrixFileSet.byPath {aroma.affymetrix} | Defines an AffymetrixFileSet object by searching for Affymetrix files |
| AffymetrixFileSetReporter {aroma.affymetrix} | The AffymetrixFileSetReporter class |
| AffymetrixPgfFile {aroma.affymetrix} | The AffymetrixPgfFile class |
