| AffymetrixPgfFile.findByChipType {aroma.affymetrix} | Locates a PGF file from its chip type |
| AffymetrixPgfFile.findByChipType {aroma.affymetrix} | Locates a PGF file from its chip type |
| AffymetrixPgfFile.fromFile {aroma.affymetrix} | Defines an AffymetrixPgfFile object from a PGF file |
| AffymetrixPgfFile.fromFile {aroma.affymetrix} | Defines an AffymetrixPgfFile object from a PGF file |
| AffymetrixPgfFile.getHeader {aroma.affymetrix} | Gets the header of the PGF file |
| AffymetrixPgfFile.getUnitNames {aroma.affymetrix} | Gets the names of each unit |
| AffymetrixProbeTabFile {aroma.affymetrix} | The AffymetrixProbeTabFile class |
| AlleleSummation {aroma.affymetrix} | The AlleleSummation class |
| AlleleSummation.getChipEffectSet {aroma.affymetrix} | Gets the set of chip effects for this model |
| AllelicCrosstalkCalibration {aroma.affymetrix} | The AllelicCrosstalkCalibration class |
| AllelicCrosstalkCalibration.process {aroma.affymetrix} | Calibrates the data set |
| allocateFromCdf.AffymetrixCelFile {aroma.affymetrix} | Creates an empty CEL file from a template CDF |
| allocateFromCdf.AffymetrixCelFile {aroma.affymetrix} | Creates an empty CEL file from a template CDF |
| allocateFromCdf.AromaUnitTabularBinaryFile {aroma.affymetrix} | Creates an AromaUnitTabularBinaryFile mapping to a given CDF |
| allocateFromCdf.AromaUnitTabularBinaryFile {aroma.affymetrix} | Creates an AromaUnitTabularBinaryFile mapping to a given CDF |
| aroma.affymetrix {aroma.affymetrix} | Package aroma.affymetrix |
| AromaChipTypeAnnotationFile {aroma.affymetrix} | The AromaChipTypeAnnotationFile class |
| AromaChipTypeAnnotationFile.byChipType {aroma.affymetrix} | Defines an AromaChipTypeAnnotationFile object by chip type |
| AromaChipTypeAnnotationFile.byChipType {aroma.affymetrix} | Defines an AromaChipTypeAnnotationFile object by chip type |
| AromaChipTypeAnnotationFile.findByChipType {aroma.affymetrix} | Locates an annotation file by its chip type |
