| AbstractProbeSequenceNormalization {aroma.affymetrix} | The AbstractProbeSequenceNormalization class |
| AbstractProbeSequenceNormalization.process {aroma.affymetrix} | Normalizes the data set |
| addColorMap {aroma.affymetrix} | Non-documented objects |
| AdditiveCovariatesNormalization {aroma.affymetrix} | The AdditiveCovariatesNormalization class |
| AdditiveCovariatesNormalization.process {aroma.affymetrix} | Normalizes the data set |
| AffineCnPlm {aroma.affymetrix} | The AffineCnPlm class |
| AffinePlm {aroma.affymetrix} | The AffinePlm class |
| AffinePlm.getFitUnitGroupFunction {aroma.affymetrix} | Gets the low-level function that fits the PLM |
| AffineSnpPlm {aroma.affymetrix} | The AffineSnpPlm class |
| AffyGenePDInfo.writeCdf {aroma.affymetrix} | Generates an Affymetrix CDF file from a Platform Design (PD) package |
| AffymetrixCdfFile {aroma.affymetrix} | The AffymetrixCdfFile class |
| AffymetrixCdfFile.compare {aroma.affymetrix} | Checks if two AffymetrixCdfFile objects are equal |
| AffymetrixCdfFile.computeAffinities {aroma.affymetrix} | Calculates probe affinities from sequence |
| AffymetrixCdfFile.convert {aroma.affymetrix} | Converts a CDF into the same CDF but with another format |
| AffymetrixCdfFile.convertUnits {aroma.affymetrix} | Gets and validates unit indices |
| AffymetrixCdfFile.createExonByTranscriptCdf {aroma.affymetrix} | Creates an exon-by-transcript CDF |
| AffymetrixCdfFile.createMonocellCdf {aroma.affymetrix} | Creates a mono-cell version of the CDF |
| AffymetrixCdfFile.createUniqueCdf {aroma.affymetrix} | Creates a unique-cell version of the CDF |
| AffymetrixCdfFile.findByChipType {aroma.affymetrix} | Locates a CDF file from its chip type |
| AffymetrixCdfFile.findByChipType {aroma.affymetrix} | Locates a CDF file from its chip type |
