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Reference index for {aroma.affymetrix}

You are viewing package members beginning with the letter "A"

Function/ClassDescription
AbstractProbeSequenceNormalization {aroma.affymetrix}The AbstractProbeSequenceNormalization class
AbstractProbeSequenceNormalization.process {aroma.affymetrix}Normalizes the data set
addColorMap {aroma.affymetrix}Non-documented objects
AdditiveCovariatesNormalization {aroma.affymetrix}The AdditiveCovariatesNormalization class
AdditiveCovariatesNormalization.process {aroma.affymetrix}Normalizes the data set
AffineCnPlm {aroma.affymetrix}The AffineCnPlm class
AffinePlm {aroma.affymetrix}The AffinePlm class
AffinePlm.getFitUnitGroupFunction {aroma.affymetrix}Gets the low-level function that fits the PLM
AffineSnpPlm {aroma.affymetrix}The AffineSnpPlm class
AffyGenePDInfo.writeCdf {aroma.affymetrix}Generates an Affymetrix CDF file from a Platform Design (PD) package
AffymetrixCdfFile {aroma.affymetrix}The AffymetrixCdfFile class
AffymetrixCdfFile.compare {aroma.affymetrix}Checks if two AffymetrixCdfFile objects are equal
AffymetrixCdfFile.computeAffinities {aroma.affymetrix}Calculates probe affinities from sequence
AffymetrixCdfFile.convert {aroma.affymetrix}Converts a CDF into the same CDF but with another format
AffymetrixCdfFile.convertUnits {aroma.affymetrix}Gets and validates unit indices
AffymetrixCdfFile.createExonByTranscriptCdf {aroma.affymetrix}Creates an exon-by-transcript CDF
AffymetrixCdfFile.createMonocellCdf {aroma.affymetrix}Creates a mono-cell version of the CDF
AffymetrixCdfFile.createUniqueCdf {aroma.affymetrix}Creates a unique-cell version of the CDF
AffymetrixCdfFile.findByChipType {aroma.affymetrix}Locates a CDF file from its chip type
AffymetrixCdfFile.findByChipType {aroma.affymetrix}Locates a CDF file from its chip type