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Reference index for {aroma.affymetrix}

You are viewing package members beginning with the letter "F"

Function/ClassDescription
findByCdf2 {aroma.affymetrix}Non-documented objects
findByChipType.AffymetrixCdfFile {aroma.affymetrix}Locates a CDF file from its chip type
findByChipType.AffymetrixCdfFile {aroma.affymetrix}Locates a CDF file from its chip type
findByChipType.AffymetrixPgfFile {aroma.affymetrix}Locates a PGF file from its chip type
findByChipType.AffymetrixPgfFile {aroma.affymetrix}Locates a PGF file from its chip type
findByChipType.AromaChipTypeAnnotationFile {aroma.affymetrix}Locates an annotation file by its chip type
findUnitsTodo.FirmaModel {aroma.affymetrix}Identifies non-fitted units
findUnitsTodo.ProbeLevelModel {aroma.affymetrix}Identifies non-fitted units
findUnitsTodo.UnitModel {aroma.affymetrix}Identifies non-fitted units
FirmaFile {aroma.affymetrix}The FirmaFile class
FirmaFile.getCellIndices {aroma.affymetrix}Retrieves tree list of cell indices for a set of units
FirmaModel {aroma.affymetrix}The FirmaModel class
FirmaModel.calculateResidualSet {aroma.affymetrix}Gets the set of residuals corresponding to the PLM
FirmaModel.getFirmaSet {aroma.affymetrix}Gets the set of FIRMA results for this model
FirmaModel.getFitUnitGroupFunction {aroma.affymetrix}Static method to get the low-level function that fits the PLM
FirmaSet {aroma.affymetrix}The FirmaSet class
fit.FirmaModel {aroma.affymetrix}Estimates the model parameters
fit.Model {aroma.affymetrix}Estimates the model parameters
fit.ProbeLevelModel {aroma.affymetrix}Estimates the model parameters
fit.SingleArrayUnitModel {aroma.affymetrix}Estimates the model parameters