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Reference index for {aroma.affymetrix}

You are viewing package members beginning with the letter "G"

Function/ClassDescription
GcContentNormalization {aroma.affymetrix}The GcContentNormalization class
GcContentNormalization.process {aroma.affymetrix}Normalizes the data set
GcContentNormalization2 {aroma.affymetrix}The GcContentNormalization2 class
GcRmaBackgroundCorrection {aroma.affymetrix}The GcRmaBackgroundCorrection class
GcRmaBackgroundCorrection.process {aroma.affymetrix}Performs background correction
GenericReporter {aroma.affymetrix}The GenericReporter class
GenericReporter.process {aroma.affymetrix}Generates report
GenericReporter.setAlias {aroma.affymetrix}Sets the alias of the report
GenomeInformation {aroma.affymetrix}The GenomeInformation class
GenomeInformation.byChipType {aroma.affymetrix}Static method to define a genome information set by chip type
GenomeInformation.byChipType {aroma.affymetrix}Static method to define a genome information set by chip type
GenomeInformation.fromCdf {aroma.affymetrix}Static method to define a genome information set from a CDF
GenomeInformation.fromCdf {aroma.affymetrix}Static method to define a genome information set from a CDF
GenomeInformation.plotDensity {aroma.affymetrix}Plots the density of SNPs for a given chromosome
GenomeInformation.verify {aroma.affymetrix}Verifies the correctness of the underlying file
getAlias.ArrayExplorer {aroma.affymetrix}Non-documented objects
getAlias.GenericReporter {aroma.affymetrix}Gets the alias of the report
getAlias.Model {aroma.affymetrix}Gets the name alias for the model
getAlleleCellPairs.AffymetrixCdfFile {aroma.affymetrix}Gets the cell indices of allele pairs
getAlleleProbePairs.AffymetrixCdfFile {aroma.affymetrix}Gets the indices of probepairs with the same pair of SNP nucleotides