| GcContentNormalization {aroma.affymetrix} | The GcContentNormalization class |
| GcContentNormalization.process {aroma.affymetrix} | Normalizes the data set |
| GcContentNormalization2 {aroma.affymetrix} | The GcContentNormalization2 class |
| GcRmaBackgroundCorrection {aroma.affymetrix} | The GcRmaBackgroundCorrection class |
| GcRmaBackgroundCorrection.process {aroma.affymetrix} | Performs background correction |
| GenericReporter {aroma.affymetrix} | The GenericReporter class |
| GenericReporter.process {aroma.affymetrix} | Generates report |
| GenericReporter.setAlias {aroma.affymetrix} | Sets the alias of the report |
| GenomeInformation {aroma.affymetrix} | The GenomeInformation class |
| GenomeInformation.byChipType {aroma.affymetrix} | Static method to define a genome information set by chip type |
| GenomeInformation.byChipType {aroma.affymetrix} | Static method to define a genome information set by chip type |
| GenomeInformation.fromCdf {aroma.affymetrix} | Static method to define a genome information set from a CDF |
| GenomeInformation.fromCdf {aroma.affymetrix} | Static method to define a genome information set from a CDF |
| GenomeInformation.plotDensity {aroma.affymetrix} | Plots the density of SNPs for a given chromosome |
| GenomeInformation.verify {aroma.affymetrix} | Verifies the correctness of the underlying file |
| getAlias.ArrayExplorer {aroma.affymetrix} | Non-documented objects |
| getAlias.GenericReporter {aroma.affymetrix} | Gets the alias of the report |
| getAlias.Model {aroma.affymetrix} | Gets the name alias for the model |
| getAlleleCellPairs.AffymetrixCdfFile {aroma.affymetrix} | Gets the cell indices of allele pairs |
| getAlleleProbePairs.AffymetrixCdfFile {aroma.affymetrix} | Gets the indices of probepairs with the same pair of SNP nucleotides |
