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Reference index for {aroma.affymetrix}

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Function/ClassDescription
identifyCells {aroma.affymetrix}Non-documented objects
image270.AffymetrixCelFile {aroma.affymetrix}Displays all or a subset of the data spatially
importFromApt.CnChipEffectSet {aroma.affymetrix}Imports copy-number estimates from an APT summary file
importFromApt.CnChipEffectSet {aroma.affymetrix}Imports copy-number estimates from an APT summary file
importFromDChip.AffymetrixCelSet {aroma.affymetrix}Imports dChip-exported CEL files
importFromDChip.AffymetrixCelSet {aroma.affymetrix}Imports dChip-exported CEL files
importFromDChip.CnChipEffectSet {aroma.affymetrix}Imports copy-number estimates from a dChip result file
importFromDChip.CnChipEffectSet {aroma.affymetrix}Imports copy-number estimates from a dChip result file
isDuplicated.AffymetrixCelSet {aroma.affymetrix}Identifies duplicated CEL files
isDuplicated.CnagCfhSet {aroma.affymetrix}Identifies duplicated CFH files
isPm.AffymetrixCdfFile {aroma.affymetrix}Checks which cells (probes) are PMs and not
isResequenceChip.AffymetrixCdfFile {aroma.affymetrix}Static method to check if a CDF is for a resequencing (CustomSeq) chip
isSnpChip.AffymetrixCdfFile {aroma.affymetrix}Static method to check if a chip is a mapping (SNP) chip