| range.AffymetrixCelFile {aroma.affymetrix} | Non-documented objects |
| readCdfDataFrame {aroma.affymetrix} | Reads units (probesets) from an Affymetrix CDF file |
| readRawData.AffymetrixCelFile {aroma.affymetrix} | Gets all or a subset of the fields in a CEL file |
| readUnits.AffymetrixCdfFile {aroma.affymetrix} | Reads CDF data unit by unit |
| readUnits.AffymetrixCelFile {aroma.affymetrix} | Reads CEL data unit by unit |
| readUnits.CnagCfhFile {aroma.affymetrix} | Reads CEL data unit by unit |
| readUnits.MultiArrayUnitModel {aroma.affymetrix} | Reads data unit by unit |
| readUnits.SingleArrayUnitModel {aroma.affymetrix} | Reads data unit by unit |
| readUnitsByQuartets.AffymetrixCdfFile {aroma.affymetrix} | Gets the cell quartets for each base position |
| ReseqCrosstalkCalibration {aroma.affymetrix} | The ReseqCrosstalkCalibration class |
| ReseqCrosstalkCalibration.process {aroma.affymetrix} | Calibrates the data set |
| ResidualFile {aroma.affymetrix} | The ResidualFile class |
| ResidualFile.getCellIndices {aroma.affymetrix} | Retrieves tree list of cell indices for a set of units |
| ResidualSet {aroma.affymetrix} | The ResidualSet class |
| RmaBackgroundCorrection {aroma.affymetrix} | The RmaBackgroundCorrection class |
| RmaBackgroundCorrection.process {aroma.affymetrix} | Performs background correction |
| RmaCnPlm {aroma.affymetrix} | The RmaCnPlm class |
| RmaPlm {aroma.affymetrix} | The RmaPlm class |
| RmaPlm.getFitUnitGroupFunction {aroma.affymetrix} | Gets the low-level function that fits the PLM |
| RmaSnpPlm {aroma.affymetrix} | The RmaSnpPlm class |
