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Reference index for {aroma.affymetrix}

You are viewing package members beginning with the letter "S"

Function/ClassDescription
ScaleNormalization {aroma.affymetrix}The ScaleNormalization class
ScaleNormalization.process {aroma.affymetrix}Normalizes the data set
ScaleNormalization3 {aroma.affymetrix}The ScaleNormalization3 class
ScaleNormalization3.process {aroma.affymetrix}Normalizes the data set
seq.TransformReport {aroma.affymetrix}Non-documented objects
setAlias.GenericReporter {aroma.affymetrix}Sets the alias of the report
setAlias.Model {aroma.affymetrix}Sets the name alias for the model
setArrays.ArrayExplorer {aroma.affymetrix}Sets the arrays
setCdf.AffymetrixCelFile {aroma.affymetrix}Sets the CDF structure for this CEL file
setCdf.AffymetrixCelSet {aroma.affymetrix}Sets the CDF structure for this CEL set
setCdf.CnagCfhFile {aroma.affymetrix}Sets the CDF structure for this CEL file
setCdf.CnagCfhSet {aroma.affymetrix}Sets the CDF structure for this CFH set
setRestructor.AffymetrixCdfFile {aroma.affymetrix}Specifies a function through which
setTags.Model {aroma.affymetrix}Sets the tags to be appended
SingleArrayUnitModel {aroma.affymetrix}The SingleArrayUnitModel class
SingleArrayUnitModel.fit {aroma.affymetrix}Estimates the model parameters
SingleArrayUnitModel.getFitUnitGroupFunction {aroma.affymetrix}Static method to get the low-level function that fits the PLM
SingleArrayUnitModel.getFitUnitGroupFunction {aroma.affymetrix}Static method to get the low-level function that fits the PLM
SingleArrayUnitModel.readUnits {aroma.affymetrix}Reads data unit by unit
SmoothMultiarrayModel {aroma.affymetrix}The SmoothMultiarrayModel class