| ScaleNormalization {aroma.affymetrix} | The ScaleNormalization class |
| ScaleNormalization.process {aroma.affymetrix} | Normalizes the data set |
| ScaleNormalization3 {aroma.affymetrix} | The ScaleNormalization3 class |
| ScaleNormalization3.process {aroma.affymetrix} | Normalizes the data set |
| seq.TransformReport {aroma.affymetrix} | Non-documented objects |
| setAlias.GenericReporter {aroma.affymetrix} | Sets the alias of the report |
| setAlias.Model {aroma.affymetrix} | Sets the name alias for the model |
| setArrays.ArrayExplorer {aroma.affymetrix} | Sets the arrays |
| setCdf.AffymetrixCelFile {aroma.affymetrix} | Sets the CDF structure for this CEL file |
| setCdf.AffymetrixCelSet {aroma.affymetrix} | Sets the CDF structure for this CEL set |
| setCdf.CnagCfhFile {aroma.affymetrix} | Sets the CDF structure for this CEL file |
| setCdf.CnagCfhSet {aroma.affymetrix} | Sets the CDF structure for this CFH set |
| setRestructor.AffymetrixCdfFile {aroma.affymetrix} | Specifies a function through which |
| setTags.Model {aroma.affymetrix} | Sets the tags to be appended |
| SingleArrayUnitModel {aroma.affymetrix} | The SingleArrayUnitModel class |
| SingleArrayUnitModel.fit {aroma.affymetrix} | Estimates the model parameters |
| SingleArrayUnitModel.getFitUnitGroupFunction {aroma.affymetrix} | Static method to get the low-level function that fits the PLM |
| SingleArrayUnitModel.getFitUnitGroupFunction {aroma.affymetrix} | Static method to get the low-level function that fits the PLM |
| SingleArrayUnitModel.readUnits {aroma.affymetrix} | Reads data unit by unit |
| SmoothMultiarrayModel {aroma.affymetrix} | The SmoothMultiarrayModel class |
