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Reference index for {beadarrayMSV}

Function/ClassDescription
assignParalogues {beadarrayMSV}Assign MSV-5 paralogs to chromosomes
assignToAlleleSet {beadarrayMSV}Create AlleleSetIllumina or MultiSet objects
beadarrayMSV {beadarrayMSV}beadarrayMSV: Package for analysis of high-throughput Illumina BeadArrays
BSRed.193 {beadarrayMSV}Atlantic salmon genotype data with mainly MSV-5 markers
callGenotypes {beadarrayMSV}Clustering and calling of genotypes
callGenotypes.interactive {beadarrayMSV}Clustering and calling of genotypes
callGenotypes.verboseTest {beadarrayMSV}Clustering and calling of genotypes
cart2pol {beadarrayMSV}Transformation from Cartesian to polar coordinates
countFailedSNP {beadarrayMSV}Calculate ratio of called markers for each array
createAlleleSet {beadarrayMSV}Create AlleleSetIllumina or MultiSet objects
createAlleleSetFromFiles {beadarrayMSV}Create AlleleSetIllumina or MultiSet objects
createMultiSetFromFiles {beadarrayMSV}Create AlleleSetIllumina or MultiSet objects
findClusters {beadarrayMSV}Suggest clusters based on histograms
findPolyploidClusters {beadarrayMSV}K-means clustering
findSeTheta {beadarrayMSV}Scale pooled standard errors after polar transformation
generatePolyCenters {beadarrayMSV}Generate list of possible genotype categories
getCenters {beadarrayMSV}Estimate starting points for clustering
getNoiseDistributions {beadarrayMSV}Estimate median and robust spread of background noise
getNormInd {beadarrayMSV}Retrieve sub-bead pool indexes
getSingleCalls {beadarrayMSV}Identify MSV-5 paralogs with equal genotypes