| assignParalogues {beadarrayMSV} | Assign MSV-5 paralogs to chromosomes |
| assignToAlleleSet {beadarrayMSV} | Create AlleleSetIllumina or MultiSet objects |
| beadarrayMSV {beadarrayMSV} | beadarrayMSV: Package for analysis of high-throughput Illumina BeadArrays |
| BSRed.193 {beadarrayMSV} | Atlantic salmon genotype data with mainly MSV-5 markers |
| callGenotypes {beadarrayMSV} | Clustering and calling of genotypes |
| callGenotypes.interactive {beadarrayMSV} | Clustering and calling of genotypes |
| callGenotypes.verboseTest {beadarrayMSV} | Clustering and calling of genotypes |
| cart2pol {beadarrayMSV} | Transformation from Cartesian to polar coordinates |
| countFailedSNP {beadarrayMSV} | Calculate ratio of called markers for each array |
| createAlleleSet {beadarrayMSV} | Create AlleleSetIllumina or MultiSet objects |
| createAlleleSetFromFiles {beadarrayMSV} | Create AlleleSetIllumina or MultiSet objects |
| createMultiSetFromFiles {beadarrayMSV} | Create AlleleSetIllumina or MultiSet objects |
| findClusters {beadarrayMSV} | Suggest clusters based on histograms |
| findPolyploidClusters {beadarrayMSV} | K-means clustering |
| findSeTheta {beadarrayMSV} | Scale pooled standard errors after polar transformation |
| generatePolyCenters {beadarrayMSV} | Generate list of possible genotype categories |
| getCenters {beadarrayMSV} | Estimate starting points for clustering |
| getNoiseDistributions {beadarrayMSV} | Estimate median and robust spread of background noise |
| getNormInd {beadarrayMSV} | Retrieve sub-bead pool indexes |
| getSingleCalls {beadarrayMSV} | Identify MSV-5 paralogs with equal genotypes |
