GenomicFeatures Package Installation Trouble
Sorry to be back so soon with a simple installation question, but my inability to solve it myself is seriously impairing my productivity. Anyway, I tried installing GenomicFeatures as suggested by the BC website.
> source("http://bioconductor.org/biocLite.R") > biocLite("GenomicFeatures")
I received the following error messages (in addition to several warning messages)
ERROR: configuration failed for package ‘RCurl’ * removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/RCurl’ ERROR: dependencies ‘XML’, ‘RCurl’ are not available for package ‘rtracklayer’ * removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/rtracklayer’ ERROR: dependencies ‘XML’, ‘RCurl’ are not available for package ‘biomaRt’ * removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/biomaRt’ ERROR: dependencies ‘rtracklayer’, ‘biomaRt’, ‘RCurl’ are not available for package ‘GenomicFeatures’ * removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/GenomicFeatures’
So some problem with the dependencies I guess, but it seems strange that they would be automatically installed prior to GF. I am using version 2.15.0. Any clue as to what the problem might be? I'd be happy to provide more info as needed. Thanks.