This function is typically called by another function to gather the statistics necessary for producing box plots, but may be invoked separately.
boxplot.stats(x, coef = 1.5, do.conf = TRUE, do.out = TRUE)
- a numeric vector for which the boxplot will be constructed (
NaNs are allowed and omitted).
- this determines how far the plot ‘whiskers’ extend out from the box. If
coefis positive, the whiskers extend to the most extreme data point which is no more than
coeftimes the length of the box away from the box. A value of zero causes the whiskers to extend to the data extremes (and no outliers be returned).
- do.conf, do.out
- logicals; if
outcomponent respectively will be empty in the result.
The two ‘hinges’ are versions of the first and third quartile, i.e., close to
quantile(x, c(1,3)/4). The hinges equal the quartiles for odd n (where
n <- length(x)) and differ for even n. Whereas the quartiles only equal observations for
n %% 4 == 1 (n = 1 mod 4), the hinges do so additionally for
n %% 4 == 2 (n = 2 mod 4), and are in the middle of two observations otherwise.
The notches (if requested) extend to
+/-1.58 IQR/sqrt(n). This seems to be based on the same calculations as the formula with 1.57 in Chambers et al. (1983, p. 62), given in McGill et al. (1978, p. 16). They are based on asymptotic normality of the median and roughly equal sample sizes for the two medians being compared, and are said to be rather insensitive to the underlying distributions of the samples. The idea appears to be to give roughly a 95% confidence interval for the difference in two medians.
List with named components as follows:
$conf are sorted in increasing order, unlike S, and that
$out include any
+- Inf values.
- a vector of length 5, containing the extreme of the lower whisker, the lower ‘hinge’, the median, the upper ‘hinge’ and the extreme of the upper whisker.
- the number of non-
NAobservations in the sample.
- the lower and upper extremes of the ‘notch’ (
if(do.conf)). See the details.
- the values of any data points which lie beyond the extremes of the whiskers (
Tukey, J. W. (1977) Exploratory Data Analysis. Section 2C.
McGill, R., Tukey, J. W. and Larsen, W. A. (1978) Variations of box plots. The American Statistician 32, 12--16.
Velleman, P. F. and Hoaglin, D. C. (1981) Applications, Basics and Computing of Exploratory Data Analysis. Duxbury Press.
Emerson, J. D and Strenio, J. (1983). Boxplots and batch comparison. Chapter 3 of Understanding Robust and Exploratory Data Analysis, eds. D. C. Hoaglin, F. Mosteller and J. W. Tukey. Wiley.
Chambers, J. M., Cleveland, W. S., Kleiner, B. and Tukey, P. A. (1983) Graphical Methods for Data Analysis. Wadsworth & Brooks/Cole.
require(stats) x <- c(1:100, 1000) (b1 <- boxplot.stats(x)) (b2 <- boxplot.stats(x, do.conf = FALSE, do.out = FALSE)) stopifnot(b1 $ stats == b2 $ stats) # do.out = FALSE is still robust boxplot.stats(x, coef = 3, do.conf = FALSE) ## no outlier treatment: boxplot.stats(x, coef = 0) boxplot.stats(c(x, NA)) # slight change : n is 101 (r <- boxplot.stats(c(x, -1:1/0))) stopifnot(r$out == c(1000, -Inf, Inf))
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