# influence.measures {stats}

Regression Deletion Diagnostics
Package:
stats
Version:
R 3.0.2

### Description

This suite of functions can be used to compute some of the regression (leave-one-out deletion) diagnostics for linear and generalized linear models discussed in Belsley, Kuh and Welsch (1980), Cook and Weisberg (1982), etc.

### Usage

```influence.measures(model)

rstandard(model, ...)

## S3 method for class 'lm':
rstandard((model, infl = lm.influence(model, do.coef = FALSE),
sd = sqrt(deviance(model)/df.residual(model)), ...))

## S3 method for class 'glm':
rstandard((model, infl = influence(model, do.coef = FALSE),
type = c("deviance", "pearson"), ...)

rstudent(model, ...))

## S3 method for class 'lm':
rstudent((model, infl = lm.influence(model, do.coef = FALSE),
res = infl\$wt.res, ...))

## S3 method for class 'glm':
rstudent((model, infl = influence(model, do.coef = FALSE), ...)

dffits(model, infl = , res = )

dfbeta(model, ...))

## S3 method for class 'lm':
dfbeta((model, infl = lm.influence(model, do.coef = TRUE), ...)

dfbetas(model, ...))

## S3 method for class 'lm':
dfbetas((model, infl = lm.influence(model, do.coef = TRUE), ...)

covratio(model, infl = lm.influence(model, do.coef = FALSE),
res = weighted.residuals(model))

cooks.distance(model, ...))

## S3 method for class 'lm':
cooks.distance((model, infl = lm.influence(model, do.coef = FALSE),
res = weighted.residuals(model),
sd = sqrt(deviance(model)/df.residual(model)),
hat = infl\$hat, ...))

## S3 method for class 'glm':
cooks.distance((model, infl = influence(model, do.coef = FALSE),
res = infl\$pear.res,
dispersion = summary(model)\$dispersion,
hat = infl\$hat, ...)

hatvalues(model, ...))

## S3 method for class 'lm':
hatvalues((model, infl = lm.influence(model, do.coef = FALSE), ...)

hat(x, intercept = TRUE))

```

### Arguments

model
an R object, typically returned by `lm` or `glm`.
infl
influence structure as returned by `lm.influence` or `influence` (the latter only for the `glm` method of `rstudent` and `cooks.distance`).
res
(possibly weighted) residuals, with proper default.
sd
standard deviation to use, see default.
dispersion
dispersion (for `glm` objects) to use, see default.
hat
hat values H[i,i], see default.
type
type of residuals for `glm` method for `rstandard.`
x
the X or design matrix.
intercept
should an intercept column be prepended to `x`?
...
further arguments passed to or from other methods.

### Details

The primary high-level function is `influence.measures` which produces a class `"infl"` object tabular display showing the DFBETAS for each model variable, DFFITS, covariance ratios, Cook's distances and the diagonal elements of the hat matrix. Cases which are influential with respect to any of these measures are marked with an asterisk.

The functions `dfbetas`, `dffits`, `covratio` and `cooks.distance` provide direct access to the corresponding diagnostic quantities. Functions `rstandard` and `rstudent` give the standardized and Studentized residuals respectively. (These re-normalize the residuals to have unit variance, using an overall and leave-one-out measure of the error variance respectively.)

Values for generalized linear models are approximations, as described in Williams (1987) (except that Cook's distances are scaled as F rather than as chi-square values). The approximations can be poor when some cases have large influence.

The optional `infl`, `res` and `sd` arguments are there to encourage the use of these direct access functions, in situations where, e.g., the underlying basic influence measures (from `lm.influence` or the generic `influence`) are already available.

Note that cases with `weights == 0` are dropped from all these functions, but that if a linear model has been fitted with `na.action = na.exclude`, suitable values are filled in for the cases excluded during fitting.

The function `hat()` exists mainly for S (version 2) compatibility; we recommend using `hatvalues()` instead.

### References

Belsley, D. A., Kuh, E. and Welsch, R. E. (1980) Regression Diagnostics. New York: Wiley.

Cook, R. D. and Weisberg, S. (1982) Residuals and Influence in Regression. London: Chapman and Hall.

Williams, D. A. (1987) Generalized linear model diagnostics using the deviance and single case deletions. Applied Statistics 36, 181--191.

Fox, J. (1997) Applied Regression, Linear Models, and Related Methods. Sage.

Fox, J. (2002) An R and S-Plus Companion to Applied Regression. Sage Publ.; http://www.socsci.mcmaster.ca/jfox/Books/Companion/.

### Note

For `hatvalues`, `dfbeta`, and `dfbetas`, the method for linear models also works for generalized linear models.

`influence` (containing `lm.influence`).

‘plotmath’ for the use of `hat` in plot annotation.

### Examples

```require(graphics)

## Analysis of the life-cycle savings data
## given in Belsley, Kuh and Welsch.
lm.SR <- lm(sr ~ pop15 + pop75 + dpi + ddpi, data = LifeCycleSavings)

inflm.SR <- influence.measures(lm.SR)
which(apply(inflm.SR\$is.inf, 1, any))
# which observations 'are' influential
summary(inflm.SR) # only these
inflm.SR          # all
plot(rstudent(lm.SR) ~ hatvalues(lm.SR)) # recommended by some

## The 'infl' argument is not needed, but avoids recomputation:
rs <- rstandard(lm.SR)
iflSR <- influence(lm.SR)
identical(rs, rstandard(lm.SR, infl = iflSR))
## to "see" the larger values:
1000 * round(dfbetas(lm.SR, infl = iflSR), 3)

## Huber's data [Atkinson 1985]
xh <- c(-4:0, 10)
yh <- c(2.48, .73, -.04, -1.44, -1.32, 0)
summary(lmH <- lm(yh ~ xh))
(im <- influence.measures(lmH))
plot(xh,yh, main = "Huber's data: L.S. line and influential obs.")
abline(lmH); points(xh[im\$is.inf], yh[im\$is.inf], pch = 20, col = 2)

## Irwin's data [Williams 1987]
xi <- 1:5
yi <- c(0,2,14,19,30)    # number of mice responding to dose xi
mi <- rep(40, 5)         # number of mice exposed
summary(lmI <- glm(cbind(yi, mi -yi) ~ xi, family = binomial))
signif(cooks.distance(lmI), 3)   # ~= Ci in Table 3, p.184
(imI <- influence.measures(lmI))
stopifnot(all.equal(imI\$infmat[,"cook.d"],
cooks.distance(lmI)))```

### Author(s)

Several R core team members and John Fox, originally in his ‘car’ package.

Documentation reproduced from R 3.0.2. License: GPL-2.